Detailed information on CNT30399358


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 9e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30307041Triticum turgidumTriticum aestivum89.3396.83100519forward
CNT30350935Triticum turgidumEragrostis tef61.147.7285.92355forward
CNT30476941Triticum turgidumArabidopsis halleri46.333.5881.04269forward
CNT30121168Triticum turgidumCitrus clementina42.6923.3581.45248forward
CNT3049544Triticum turgidumCucumis sativus64.8947.0779.84377forward

Expression of CNT30399358

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MMATLGCKMATSGCMQEMLGCMLARSDYKPVMLDYSSAMWGYSLVMLGCSSEMWGCS*

>peptide 2 (28 aa)
MDCNHLQRMGCSLTGRVRMPCPQHMVRTE

Sequence

>CNT30399358
CGGGCTTGGTTGTGCATATGATGGTGAGGTGGGCGAGTAGTTCGGTGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCTGTAACCAGGCGATGTAGGGCTG
TATGCAGGCGATGTAGGGCTGTATGAGGGCGAGGTAGGGCTGTATGAGGGGGATGTCGGGCTGTATGAGGGTGACGTGGGGCTGTATGAGGGTGATGTCG
GGCTGTACGAGGGAGAAGTAGGGCTGTATGATGGCGACGTTGGGCTGTAAGATGGCGACGTCGGGCTGTATGCAGGAGATGTTGGGCTGTATGCTGGCGA
GGTCGGACTATAAACCGGTGATGTTGGACTATAGCTCGGCGATGTGGGGCTATAGCTTGGTGATGTTGGGCTGTAGCTCGGAGATGTGGGGCTGTAGCTA
GGAGATGTGGGGCTGTAGCTGGGCGATGCAGGGCTGTATGATGGAGAAGTGGGACTGTAACCATGTCCTGGCCCTGGGCTGAACACCGGAGAAGATGGAC
TGTAACCACCTCCAGAGGATGGGCTGTAGTTTGACGGGACGGGTGAGAATGCCATGCCCCCAACATATGGTGAGAACTGAG