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Detailed information on CNT30399278


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 5e-90

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30306465Triticum turgidumTriticum aestivum96.7769.38100630forward
CNT30669573Triticum turgidumTriticum dicoccoides10066.3698.46651forward

Expression of CNT30399278

Peptides detected in this lncRNA

>peptide 1 (35 aa)
QENTDNSATADTIQASLIYQVHQSCFTTALVFKYN*

>peptide 2 (49 aa)
MEGGLLLDVVVSQGAAILKLLTSKDEALLVRGDALLVLDLGLHVVDGVR*

>peptide 3 (53 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICMPPLSLSTRWRVDSFWML*

>peptide 4 (29 aa)
MHHSTVETKKRPGQQTQAPLEAIPKTQDL*

>peptide 5 (30 aa)
NKKTQITQQLQTQFRPHLFIKFTKAASQQL*

Sequence

>CNT30399278
AACAAGAAAACACAGATAACTCAGCAACTGCAGACACAATTCAGGCCTCACTTATTTATCAAGTTCACCAAAGCTGCTTCACAACAGCTTTAGTTTTCAA
ATACAACTGAACATAACGATGCATCACAGTACGGTAGAAACAAAGAAACGACCAGGACAACAGACACAGGCACCATTGGAGGCCATACCGAAGACACAAG
ACCTGTGAACCCGCACAGAAGCCGCTCCATTGCCAGGTACTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATA
GTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTGACA
TTGTCGATGGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGCCACCCCTGAGCCTGAGCACCAGAT
GGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCC
CTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGATGACTC