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Detailed information on CNT3039925


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT003133, E-value = 2e-144

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672164Marchantia polymorphaSetaria viridis65.9339.3592.97327forward
CNT30641383Marchantia polymorphaNymphaea colorata65.7310.4492.64326forward
CNT30378673Marchantia polymorphaArabidopsis thaliana65.7326.1496.01326reverse complement
CNT30283003Marchantia polymorphaChenopodium quinoa65.7334.1495.09326reverse complement
CNT30406993Marchantia polymorphaBeta vulgaris18.5523.7783.792reverse complement
CNT30505560Marchantia polymorphaNicotiana attenuata65.7314.7495.71326reverse complement
CNT30162096Marchantia polymorphaPistacia vera25.242.0996125reverse complement
CNT3089926Marchantia polymorphaSolanum tuberosum62.914.193.91312reverse complement
CNT30219690Marchantia polymorphaHordeum vulgare65.9347.7494.8327reverse complement
CNT30543266Marchantia polymorphaBrassica napus65.7312.0196.01326forward
CNT30554477Marchantia polymorphaOryza glaberrima22.1815.2193.64110reverse complement
CNT30147396Marchantia polymorphaMedicago truncatula65.7310.9695.71326forward
CNT30437461Marchantia polymorphaAegilops tauschii53.8398.8994.76267reverse complement
CNT30600960Marchantia polymorphaFraxinus excelsior35.4819.4982.95176forward
CNT30605073Marchantia polymorphaGossypium raimondii65.7321.4595.71326reverse complement
CNT30715685Marchantia polymorphaMalus domestica golden55.6522.6885.51276reverse complement
CNT30346086Marchantia polymorphaEragrostis tef65.9343.1494.8327forward
CNT30595568Marchantia polymorphaOryza meridionalis15.7320.193.5978reverse complement
CNT30359771Marchantia polymorphaLactuca sativa65.7331.295.4326forward
CNT30429739Marchantia polymorphaPapaver somniferum65.7310.1392.94326forward
CNT30571801Marchantia polymorphaVitis vinifera65.7324.9895.71326reverse complement
CNT3056076Marchantia polymorphaAmborella trichopoda65.3214.0789.51324forward
CNT3038324Marchantia polymorphaCucumis melo65.7317.2994.79326reverse complement
CNT30331625Marchantia polymorphaDioscorea rotundata47.1873.5893.59234forward
CNT30151167Marchantia polymorphaBrachypodium distachyon23.1919.6994.78115reverse complement
CNT3099709Marchantia polymorphaOryza rufipogon50.611.5395.22251forward
CNT30557400Marchantia polymorphaPanicum hallii65.9323.8393.58327forward

Expression of CNT3039925

Peptides detected in this lncRNA

>peptide 1 (37 aa)
SVPKEHPKGLSPMGTRNDEVALTIEQKNFFFACLLNS*

Sequence

>CNT3039925
ATCGGTCCCTAAGGAACACCCGAAAGGGCTTAGTCCGATGGGTACACGAAATGACGAAGTTGCTTTGACTATTGAACAAAAAAATTTTTTTTTTGCGTGT
TTGTTAAACTCGTGAATTGGATTATTGGGCAGGCCGGAGGACTTCCAGGAAAAAACTTCGTGAAAAAAAACCGTACCCCAAACCGACACAGGTGAACAAG
TAGAGCATACTAAGGCGCTTGAGAGAACCATGTTGAAGGAACTCGGCAAAATGACCCCGTAACCTCGGGAGAAGGGGTGCTCTCCTATCTTCGGATTGGG
AAAGCGGCACATACCAGGGGGTAGCGACAGTTTATTAAAAACACATGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGG
AAGGTGAAAAGGAGAAGTGTTTTAAGCTTCGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCG