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Detailed information on CNT3039904


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676770Marchantia polymorphaSetaria viridis5.4643.684.7892forward
CNT30524031Marchantia polymorphaSetaria italica3.922487.8866forward
CNT30549116Marchantia polymorphaIpomoea triloba4.9929.5884.5284forward
CNT30375144Marchantia polymorphaArabidopsis thaliana8.1433.8381.75137forward
CNT30385683Marchantia polymorphaTriticum turgidum3.526.5889.8359forward
CNT30564990Marchantia polymorphaActinidia chinensis5.3421.2886.6790forward
CNT30586754Marchantia polymorphaMusa acuminata5.735.5687.596forward
CNT3085870Marchantia polymorphaVigna radiata5.8222.3284.6998forward
CNT30234760Marchantia polymorphaBrassica oleracea3.8621.3186.1565forward
CNT30552571Marchantia polymorphaOryza glaberrima4.9332.8184.3483forward
CNT30436848Marchantia polymorphaAegilops tauschii6.7138.4483.19113forward
CNT30254684Marchantia polymorphaAvena sativa3.8628.8989.2365forward
CNT30218729Marchantia polymorphaKalanchoe fedtschenkoi3.822.0787.564forward
CNT30681461Marchantia polymorphaTriticum urartu5.6422.4685.2695forward
CNT30477407Marchantia polymorphaArabidopsis halleri8.5522.5781.94144forward
CNT30101140Marchantia polymorphaOryza rufipogon4.3928.2485.1474forward
CNT30575194Marchantia polymorphaOryza barthii4.133.6688.4169forward
CNT30116634Marchantia polymorphaOryza nivara3.9231.4390.9166forward

Expression of CNT3039904

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRENKLCPPTPTLLRETTDQISAKQVESE*

>peptide 2 (36 aa)
MYRNKNVAINSAIPALQNDHEVSSDLSNRGAAAGSW*

>peptide 3 (33 aa)
ACTQGGSLIQTTPRAYNQLMSKLSIHPCSCSEE*

>peptide 4 (53 aa)
MLLRKRTCDLRGRESHERCAWHRWQRRRCRPRRKCPRSQHRDLIPWCIRERRC*

>peptide 5 (38 aa)
MGSVSRTLAHPSDRCDLGARGWVGGGAKDRNTMNAPAT*

>peptide 6 (81 aa)
MAPKHWQIMYNKARGSETLRARNSPKVTAGLMCPPVYTYTSADFGNHPVSIRSNTSAPALTSSFQVYDDLARMRQLYCPFV*

Sequence

>CNT3039904
GCATGCACGCAAGGGGGCTCGTTAATACAGACGACTCCAAGAGCATATAACCAACTGATGAGCAAGCTGAGTATTCATCCTTGTTCCTGTAGTGAGGAGT
GAGGAGTGAGGAGTGAGCGAGAGAGCACTGAACACTAGTTTCTGAACACAGCTGCTGCTGCTGCTGCTTCTTCCTGCTGAGGAGAAGTGGATGCTCTTAA
GAAAGAGGACTTGTGACTTACGGGGACGTGAGAGTCACGAGCGTTGCGCTTGGCATCGGTGGCAGAGAAGACGGTGTAGACCAAGACGAAAGTGCCCACG
ATCTCAGCACCGAGACCTGATCCCTTGGTGTATCCGTGAGCGACGGTGTTAGCTCCTCCACCGAATTCCTCGTATGGACTCTTCTGGAAACCCTTCACGA
CTCCTGCTCCGGCAATGGCTCCCAAACATTGGCAGATAATGTACAACAAAGCACGGGGAAGTGAGACCTTGCGTGCCAGGAACAGTCCGAAGGTCACAGC
GGGGTTGATGTGTCCTCCTGTTTACACATACACAAGCGCAGATTTTGGGAACCATCCCGTCAGTATCAGAAGCAATACCTCTGCCCCTGCCTTGACATCA
AGTTTCCAAGTATATGATGATTTGGCCCGCATGCGTCAGCTCTACTGCCCATTTGTGTAACGTGCTGCAACTGATGCCTCGCTCGCTTGAGTAAGAAGAG
GATTCAATCCTGGACTCGAGAGCTCAAGGACTTCGACGATCTGAGCTGTAAACTAAAAGCTAGCCAGCCATCTGAGTGCCGAAGGTAGAAACCACTCAGG
TTTTCTCCACATATGCACGCATGAGAGAAAATAAGTTATGTCCTCCTACTCCAACTCTCTTAAGAGAGACCACTGATCAGATTTCCGCTAAGCAGGTTGA
AAGTGAATAGCAGAGCTCGGCACAATGTCGTAGTGTGGATGAAAAAACGAAGCAACTTTTGAGAAGGACCATGTAGGATCCATTCGAAGCCGTGTCTCTT
TGGAACTGTAAGTATACTCTTACGTCTTGGATTAATGGGGATCCGCGAGGCGAACTGGTAGCATTGGGTTTAAGAATAAAATCAAACGATCGCTGATGTG
AACGAAAAACGAAGAGTGAAACAAAGGCTGGGTAGAGGAGTAAGGGAGAAGAATTGTGGAAACAGTACCTGAGATACCGGCAGTGCAGTAGACCAGCACG
AAAATCATACCACCAAAGGCCCATGCAATGCCCTGGATACCAACACCATTGCAACCTCCTAGGCGAGACTGACCGAGGACGGTGCCGACTGTGATGTATA
GGAACAAGAATGTTGCGATAAACTCGGCGATACCTGCCCTCCAGAACGACCACGAAGTCAGCTCAGACTTGTCGAACAGAGGTGCTGCTGCGGGCTCTTG
GTAGTCCTTCTCAACCTGAGCGCTGGTTCCGAGAGGAGACCTCTCGGAGAACTTTCCAGCTCCGATCTGGACATCATCCAACTTGTCTCCCATCGTGAAT
TCCTGCACCTTTGGCTGGTGAAACTTGGCTAGACTTCGCAGCAGCAGAGCTCAGCTCAGATCGAAATGGGATCGGTCTCGCGGACTCTCGCTCACCCTTC
AGACAGATGCGATCTTGGAGCTCGGGGCTGGGTGGGAGGAGGGGCAAAGGACAGGAATACAATGAATGCGCCTGCGACCTGATC