Detailed information on CNT30398756


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520681Triticum turgidumSetaria italica4.1320.6485.7177reverse complement
CNT30553785Triticum turgidumOryza glaberrima4.5623.4288.2485reverse complement
CNT30109967Triticum turgidumOryza longistaminata4.5620.2488.2485reverse complement

Expression of CNT30398756

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPRQHTGSISCLVPKMGKVKTHPDTVLQT*

>peptide 2 (29 aa)
MCFVWWIWPNLADEEPAPISVSSLPNPRA*

>peptide 3 (32 aa)
MYVFYDCLKADDAKQNMAAQSLLIAKSMSKLT*

>peptide 4 (56 aa)
MLLQSNKRNSVIGKVTYSTTENLDFPMYYLLQNHAKTAHREYLLSCSQDGQSEDTS*

>peptide 5 (80 aa)
MPIFGLNWISALATGVFFGVLHLGNGRKYSFAVWATFVGLAYGLATIASSSIIVPMASHSINNIIGGLLWRFGDNSERKI*

>peptide 6 (37 aa)
MAMVMLLVMAKLQVPQGVLLVLHSHIRLAACSRSPSS*

Sequence

>CNT30398756
AGAAGTACTCCTAGTAGTAAGCAGACGAGATGTGCTTTGTGTGGTGGATATGGCCTAACTTAGCCGACGAGGAGCCGGCTCCAATCTCGGTCTCCTCTCT
CCCTAATCCTAGAGCTTAATCGTGGCCATCCGTTGCGGATGATGATGCTCGCAGCGAGCGCGCTGCCCCTCCAAGATCATATTTGAACAGGTTGGAAACG
CCAGATCTCAGCTGTTACCTACCAACAGCCACATTCAGTCCCACGCGCTGTGTTCAGAGTATCTGCAACAAAGAATAATGAGAGGAAACGGAGGCGCGCC
CGGAATCTGCCCAAAGGCCCAGCGTTGATCGCCGAGGAAGCTTCTCCGAGCAACGGCGAAAACCCCGCCACCATCCTCGGTCTCGATGGCGATGGTGATG
CTACTAGTGATGGCAAAGTTGCAGGTGCCCCAAGGGGTGCTGTTGGTCCTGCACTCTCACATCCGGCTTGCTGCTTGCAGCAGGTCTCCTTCTTCGTGAG
GCATCACACATTGCATCTTCAAATGGATTGCCATTTGCTGACCCTACAGCCATATCATTCAATTTTGAAACTTGGCATCTCGAGTTGGTCGCTGGACTCG
TAATATTGATATCGTCTACCAGATACATTCTGCTGCAGACATGGCCCGATTTCAGAGATTCCAGTGAAGCTGCAAATACACAGATCCTTACTTCCCTGGA
GTCTCTGGATTACATAGTAGTTGCTTGTCTCCCTGGAATAAGCGAAGAGTTCCTGTTTCGAGGTGCATTGATGCCAATTTTTGGATTGAATTGGATAAGT
GCTCTAGCAACTGGTGTATTTTTCGGCGTTCTTCACTTGGGCAACGGCAGGAAATATTCATTTGCAGTCTGGGCAACATTTGTAGGCCTTGCCTATGGTT
TAGCAACCATAGCTTCCTCAAGCATCATAGTCCCAATGGCTTCTCATTCCATAAACAATATTATTGGAGGCTTACTTTGGCGCTTCGGAGACAACTCAGA
AAGAAAAATATAGATTGGGTAATACTTCCTCTTGAACAAAAGTTTTCATTTGCAATTTGTACATGTAGCACTATCATAGATTGTTTTAGTTCTTACTGGA
CTCGTTGGTTACTTCAGTTGCTGCCTGTATTATCTGTGGATAAGTAGTCCTCAAATCATTTGGTGGTGAAATTAAGCTAATGATAGCTGTTTTACTTGTG
TCATGTTATCTTCCATGCTTTTTGAGCTACTGATACTCTGGCTTATACCGAACCTGAAACCGTATGTTATTTAACTAGAACTGCCATGGGTGGGTCTGAT
ACTCTGATATTGTCATATTCAGATCATGTTGCTTCAAAGTAACAAACGTAACAGTGTTATTGGAAAAGTAACATACAGCACAACTGAAAACTTAGACTTT
CCGATGTACTATTTACTACAAAATCATGCCAAGACAGCACACCGGGAGTATCTCCTGTCTTGTTCCCAAGATGGGCAAAGTGAAGACACATCCTGATACG
GTTTTACAGACTTGATATTACTTGCAGCACTTTTCACAAACAGGTGGAAACCTGTGGATGTTACAGTAGCAGCAGGCCACACTGCAGTAATTGTTGCAAC
CTGTAAATAGTATCAGTTCATTCAAGAAAATCAGTAACCTCAGCATGACTTGTAACAATGTATGTATTCTACGACTGTTTGAAGGCTGATGATGCAAAGC
AAAACATGGCGGCACAATCTCTCCTAATAGCCAAAAGCATGTCAAAGCTTACATAAGCTGCGGAAAGCATCATGATAAGACAGAGAGTTTCAGCAGATTA
CCAGTGATAACAATGTATCCAGACGTTCGTGCGCTCCTCGAGCTAGCCGCGGGTAGAGGCGGT