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Detailed information on CNT30398713


BLAST search results

BLAST vs Swiss-Prot:
sp|P55313|CATA2_WHEAT, E-value = 2e-57

BLAST vs NONCODE:
NONCQUT006985, E-value = 3e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674192Triticum turgidumSetaria viridis30.1536.2889.0282forward
CNT30317874Triticum turgidumCorylus avellana81.6290.9886.49222forward
CNT30373064Triticum turgidumArabidopsis thaliana41.9119.9683.33114forward
CNT30405515Triticum turgidumBeta vulgaris54.7810.9781.21149forward
CNT30526368Triticum turgidumPhaseolus vulgaris44.857.6684.43122forward
CNT30708847Triticum turgidumGlycine max66.9118.9481.87182forward
CNT30567579Triticum turgidumActinidia chinensis57.3545.4882.69156forward
CNT3085325Triticum turgidumVigna radiata65.8125.3282.12179forward
CNT30238041Triticum turgidumBrassica oleracea45.9616.4580.8125forward
CNT30511681Triticum turgidumSolanum lycopersicum77.5763.5581.99211forward
CNT30668910Triticum turgidumTriticum dicoccoides10096.8100272forward
CNT30611006Triticum turgidumArabis alpina41.9137.585.09114forward
CNT308572Triticum turgidumZea mays91.5485.8689.96249forward
CNT30714890Triticum turgidumMalus domestica golden78.6876.1684.11214forward
CNT30624536Triticum turgidumDaucus carota63.612.3183.24173forward
CNT30368346Triticum turgidumSorghum bicolor91.5492.2290.36249forward
CNT30359648Triticum turgidumLactuca sativa61.442.8279.04167forward
CNT30704829Triticum turgidumPrunus avium34.9315.387.3795forward
CNT30119031Triticum turgidumCitrus clementina99.2635.5781.85270forward
CNT30576776Triticum turgidumOryza barthii37.1328.5393.07101forward

Expression of CNT30398713

Peptides detected in this lncRNA

>peptide 1 (89 aa)
SGVELHCKTTWIPQGLRASTLMHNGREPDNNRGLNPRSPEEISASELRNIMSHLKEPLSTGSPCMNNTFRDTLPVKLCKLFNQMVILKKD

Sequence

>CNT30398713
CTCTGGTGTAGAACTTCACTGCAAAACCACGTGGATCCCTCAAGGTCTCAGGGCTTCCACGCTCATGCACAACGGTAGAGAACCGGACAATAACCGGGGT
CTGAACCCCAGGAGCCCGGAGGAAATCAGCGCAAGTGAGCTGAGAAACATCATGAGTCACCTCAAAGAACCCCTTAGCACTGGCTCCCCGTGCATGAACA
ACACGTTCAGGGATACGCTCCCGGTCAAACTGTGCAAGCTTTTCAATCAGATGGTAATCCTCAAGAAGGATA