Detailed information on CNT30398534


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440859Triticum turgidumAegilops tauschii20.6774.387.97266reverse complement

Expression of CNT30398534

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGFAVAINLVSRAPTPTSVYIVRVTGAHQS*

>peptide 2 (32 aa)
MGGGSRYCLVECCTERVDDDDPRCRATAGWCR*

>peptide 3 (78 aa)
MICGTVALPSPVTRFPQRKRAAVERRGCGAPFALCRVVFFFPDPRHADAIRDREERRGRSGGATFSVEDSFFEISLPF*

>peptide 4 (84 aa)
ERRVRRDGAVPCSCASGDDLWHRCLTFAGDAFPSAEARRRRTAWLRCPLCPLQGCVLLPGSSACRCDSGSRGTTRPERRRYFFR*

>peptide 5 (45 aa)
MTTFALKYGKMGELRIVGRGGRASMAYTVAHDLNQPTLSPIAFWM*

>peptide 6 (57 aa)
MPMRFGIERNDAAGAAALLFPLRIHSLRYLCPSRVLWGGEKLFFDLLLLLYLSTEKT*

Sequence

>CNT30398534
AGAAAGACGAGTGAGGCGCGACGGAGCCGTTCCCTGCTCCTGTGCGTCCGGCGATGATCTGTGGCACCGTTGCCTTACCTTCGCCGGTGACGCGTTTCCC
TCAGCGGAAGCGCGCCGCCGTCGAACGGCGTGGCTGCGGTGCCCCCTTTGCCCTTTGCAGGGTTGTGTTCTTCTTCCCGGATCCTCGGCATGCCGATGCG
ATTCGGGATCGAGAGGAACGACGCGGCCGGAGCGGCGGCGCTACTTTTTCCGTTGAGGATTCATTCTTTGAGATATCTTTGCCCTTCTAGGGTTCTTTGG
GGAGGGGAAAAACTTTTCTTTGATTTACTTTTACTGTTGTATCTTTCTACTGAAAAAACCTAACCCGATCTGGCTCTGATATCGTTGATAGATCCTCTGG
ATCGGGACGGTTAGATCTTTTAGGTACACCTATCTTCTCCTGGTCCAGATGAGGAACTCCCGGTGCCGGCCATGATGACGGTGGCCGTGATGGCAGTGAG
TGGATGGTGGTGGTAGTGGAGCTTCTCGTGAGCACCGCGCTAACCCTAGATCGGTAAGGAATATCGATGGGGTTTGCGGTAGCGATTAACCTCGTGAGTC
GTGCCCCGACCCCCACTTCTGTTTATATAGTGCGGGTCACAGGGGCCCACCAATCATAATGGGTTCTGCGCCCCCGATCAGGGCGCATTGACCAAGGACC
TGGCAGGCCGTTGGGCTTGCACAGAGGAGATCAACCTAACAACACCTACTGGTTCGACGCAGGTTCCGCTACCACGGCGAGTGGCTGCTGCTGTTCCGCG
GGGAGGCGCACTACGACGGCGAGCTGGACGCGTGGGTCGGGCTCGCGGACGAGGCGCCCGGGCGCGTCGCGTCGTGTGACTTGCCGTCGAGGCGGGCTGA
GCCCGCCGGCGAGGCCAGCGAGGGGCCGGACTGGAAGCTCAGGAGGAGAGGCTGTTCGAGTTTGAATCGGCGGGGCACCTCGGGGCCACGCTGGTGTACA
TGGGAGGAGGCAGCAGGTACTGCCTGGTTGAGTGCTGCACGGAGAGGGTTGACGACGACGACCCTCGCTGCCGTGCCACCGCCGGGTGGTGCAGATGACC
ACCTTCGCTCTCAAGTACGGCAAGATGGGGGAGCTCCGGATCGTCGGCCGTGGGGGGCGCGCATCCATGGCGTACACGGTGGCTCATGACCTGAATCAGC
CGACACTCAGTCCTATCGCATTCTGGATGTAACTTTGATGACTACTACTGTTATACTCCCTCCGCCTAAATATAAGTCAGAGATTTG