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Detailed information on CNT30398468


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 4e-71

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3082954Triticum turgidumBrassica juncea45.6716.5390.26195forward

Expression of CNT30398468

Peptides detected in this lncRNA

>peptide 1 (49 aa)
SASETMGDKLHPREGNNPDHQVRPQNDRSVIKEVGCKDSQEVCLEAATL*

>peptide 2 (68 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNSESGGRRSGSENVGLSNENIGENPMPRKPKVSFARFIHGG*

>peptide 3 (32 aa)
MSKCIGRGAFRLRGKQQRKRGSTKRKRECRLE*

Sequence

>CNT30398468
GTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCCTCGAGAGGGAAACAACCCGGATCACCAGGTAAGGCCCCAAAATGACCGCTCAGTGATAAAGGAG
GTGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAGAGAGTGCGTATTAGCTCACTAATCGAGTGCCCTTGCGCTGAAGATGAAC
GGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACAGCGAAAGCGGGGGTCGACGAA
GCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTTCGCAAGGTTCATCCATGGAGGGTG
AGTCAGGGCCTAAGATCAGGCCGAAAG