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Detailed information on CNT30398268


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690830Triticum turgidumOryza sativa34.6710097.04371reverse complement
CNT30501326Triticum turgidumCoffea canephora87.298.8486.51934forward
CNT30486612Triticum turgidumOlea europaea23.93100.7989.84256reverse complement
CNT30226086Triticum turgidumHordeum vulgare95.3319.298.921020forward
CNT30688804Triticum turgidumTriticum urartu10028.8999.811070forward
CNT30365219Triticum turgidumSorghum bicolor23.4630.8494.82251reverse complement

Expression of CNT30398268

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MNHSSGLSLPPRPKTYPRHSAHSFRAREGNEVQFKRPQRSGAAATRSSLP*

>peptide 2 (85 aa)
MVTKVTSVRQFRLNSSLYVSGLTGRAGAPRSFFLCGTMPGNVSRRRTTTRQLTTFAFSLHEMSQCIGPMDNRTELAKRLGALHTM*

>peptide 3 (48 aa)
MASGGFGIAAHVRLRFAFPLDWTRVSCRKYGYESDFGSPVQAQLLALR*

Sequence

>CNT30398268
CTACTAGGCGCGATCATCCCGCATGCCATAAAAAAATACTTCTTTTTTTTATGGCCCGTCATATAAAGATAGAATAGATATGGATAGAGAGACATTCTAT
TGATTCGCGAAATGGCTCGTCGATCCAAATGAATCATTCTTCTGGTCTCTCTCTGCCCCCCCGCCCCAAAACTTACCCACGACACAGCGCCCATTCGTTT
CGCGCGCGGGAAGGCAACGAAGTTCAGTTCAAAAGACCGCAGCGGAGTGGAGCAGCCGCGACACGAAGTTCCTTACCTTAGCTGGATCTCGCTGGTGCCA
CCTAAACGGTAGGTATAGGCGGCGGATGTCTGACGTTTGGAGTTGTCGTTCGTGCACCTGTCCCCAATAGAAGAATGAGTGATCCCTTCCCCTGCGGATC
ATGGCCTTACCACTAGGTCCCCGATGGCCAGCGGGGGATTCGGTATAGCAGCTCACGTTCGTTTGCGCTTCGCGTTCCCGCTGGACTGGACACGTGTTAG
CTGTAGGAAGTATGGTTACGAAAGTGACTTCGGTTCGCCAGTTCAGGCTCAACTCCTCGCTTTACGTTAGCGGACTTACAGGTCGGGCCGGGGCTCCACG
CTCTTTCTTTCTGTGTGGGACGATGCCGGGGAATGTGTCGAGGCGGCGAACAACAACAAGACAACTAACTACATTTGCTTTTTCCCTCCATGAGATGAGC
CAGTGCATTGGACCGATGGATAATAGAACTGAGCTGGCCAAACGCTTGGGCGCTCTACATACGATGTAGAAAAAATAAGATACATATCGATTTCTTTCTG
ATGGATCCAGAATAGATAGATATCTTGTATCATCAATAGATAGAAAGAGGTCAACCCTTATTATTGATAGAAAACCTTTCGATCTATCAGAACAGATCAG
GCCATCTATCAATCGATTTGAATCATCTCGCTTTTCGTTCATTTCAGCCACGCCATAATAGCCGCCACAATAAGAAAGAAGCAAGCGAAACAGCTAGAAG
CGCTCGCTTCGCCGCGCCCAACAATTCTTATTCACGGGAAAGCCAACCGAAAGATTCGATTCGGACTTCG