« Back to Triticum turgidum search


Detailed information on CNT30397916


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 2e-31

BLAST vs NONCODE:
NONSTUT000620, E-value = 5e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30239924Triticum turgidumAvena sativa18.5268.791.81281forward
CNT30668444Triticum turgidumTriticum dicoccoides30.2665.9598.04459forward
CNT30687810Triticum turgidumTriticum urartu78.8477.6699.161196forward

Expression of CNT30397916

Peptides detected in this lncRNA

>peptide 1 (43 aa)
KHQARQTILWIEFRAHLILSSSKLLHTSRSLQIQTITLHHSTV*

>peptide 2 (83 aa)
MRRCWSGGMPSLSWIFALTLSMVSEDSTSRVMVLPVRVFTKICICKYKADRSRLSYSTGISAVRQTIDEPDGHHATKMKLQQR*

Sequence

>CNT30397916
GAAACATCAGGCAAGACAAACAATATTATGGATTGAATTCAGGGCTCACTTAATATTAAGTTCATCAAAGCTGCTGCACACCAGCAGAAGTTTGCAGATA
CAAACGATAACACTGCATCATAGTACGGTATAGAAACAAAGACAGTTCAGGCAACGACAGACATAGACCAGACTCCTTAAGGACACCGAAGACGAGACTT
GTGAACCCAGAGACAAAAGCAGCTCCATGGCCAGGAGCTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGT
CCGCCAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACAT
TGTCAATGGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGTAAATACAAAGCAGACAGAAGCAG
ATTAAGTTACAGTACAGGGATATCTGCAGTACGTCAAACAATAGATGAACCAGATGGCCACCATGCTACAAAGATGAAATTGCAACAGAGATGAAATCAG
CTAGAGAGCTGACAGCAAACTGCCCAGGAGCTGGCCACTAGAACAAGCCAATGGATTGACATAATATAAGAGTGTTTTTGACACTATACTAGTATCAAAA
ACGCTGTTATATTATGGGACGGAGGGAATAGCATATCTACCAGCGCAGTTTCAATAGGAGCTGATGTAATCTGGTTGTACTGAGAAGCTTGTCAACAAGC
CTAGAAACCAACAGTAATATCGGCAAACCGACATGAATTTAAGAGTTGAATTCAATGCCCAACTACGGACGCTACAAGCAACTACAAAGCTGAACTATTA
ATCTAGCAAATCATAGGTGTATCCTTCCACAGATCATAGGGCTACAAAATCAGAAACTAGCTAACTAAGTCTATAACGAGATAGATGAACCGAACCAACA
GCAATCGCATCGCATCCCAGTAATACCACGAAGGTGTACCCTTCAACATATGAGGCTCATGAGCGGTACATAATCAAAAATCCACAATAACAACCAAGCA
GAACTAAGACGAACCGACCCCACAGCAATCCCATCATAATCGGCAGATCTGCTCGAAAATCACGGCATAATCAAGAGAGACGTGTTAACTACAATCAGGC
CTAAAAAACAAAAAAAAAACTACAATCAGGCCTAATCAGCCACGACTAACCGAACGAGCTGCAATCGATCAACAGCAATAACGCCTCGACCCACCCACAG
ATCTACTCCAAATCCATACGACTAGCAGGATCGAGGGCGGTGCTAGCAACGATCGATCCAAGGGCACGCACGCACGCACGAGAGAGCGAAGAAGAAACCG
TAGCCTCGCATACCTTGAGGAGGAGGACGAGAGAGCCTTCGCTTCGCTCGGATCGGAGGTTTCCCGGTGAGATCGTAGGGGGGCTGGATTGGATTGGATC
GGATCGGATGTGTGGAG