Detailed information on CNT30397867


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30443372Triticum turgidumAegilops tauschii68.7293.1393.59312forward

Expression of CNT30397867

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MTNLSNCMNSVLELYLLLIFGHQVLYAFACISIIVWMLLSAACRV*

>peptide 2 (44 aa)
MGVVTVCCSFLCVSLAAADCGRTCLAWWRHSSHLSTRLFQKPAL*

>peptide 3 (44 aa)
TPPTPHHKTAAAAAGGGEAAGARRRSREEAEEEAPKDEAAIQVG*

>peptide 4 (35 aa)
MVAPFFSSVNSLIPETCTLVGLLSLLLVVPGVLLS*

>peptide 5 (42 aa)
LPPLPTTRPPPPPQEEEKQQGREGDLARRLKRKRRKMRQRSK*

>peptide 6 (30 aa)
HSPHSPPQDRRRRRRRRRSSRGEKEISRGG*

Sequence

>CNT30397867
CACTCCCCCCACTCCCCACCACAAGACCGCCGCCGCCGCCGCAGGAGGAGGAGAAGCAGCAGGGGCGAGAAGGAGATCTCGCGAGGAGGCTGAAGAGGAA
GCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCTGATGGGGGTGGTGACGGTGTGCTGTAGCTTCCTATGTGTGTCTTTGGCTGCGGCTGACTGCGGGCG
TACTTGCTTGGCATGGTGGCGCCATTCTTCTCATCTGTCAACTCGCTTATTCCAGAAACCTGCACTTTAGTAGGCCTGTTATCGTTGCTTTTAGTTGTAC
CAGGAGTTTTGCTATCATGACCAATCTATCCAACTGTATGAACTCTGTTTTGGAGCTTTATTTGCTGCTAATATTCGGCCATCAAGTACTTTATGCTTTT
GCATGCATCAGCATTATTGTCTGGATGCTCTTATCTGCTGCGTGTAGAGTTTGA