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Detailed information on CNT30397839


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 6e-99

BLAST vs NONCODE:
NONMTRT002043, E-value = 4e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30192776Triticum turgidumSecale cereale52.0971.5890.22685forward
CNT30475689Triticum turgidumSaccharum spontaneum35.3663.0992.04465forward
CNT30140894Triticum turgidumLolium perenne35.3669.7292.9465forward
CNT3067610Triticum turgidumLeersia perrieri35.5126.2592.51467forward
CNT30576670Triticum turgidumOryza barthii35.5955.9193.16468forward
CNT30583297Triticum turgidumEchinochloa crusgalli36.0524.6690.93474forward

Expression of CNT30397839

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILAFTLSIVSEDSTSSVMVLPVRVFTKICIPPLSLSTRWRVDSFWML*

>peptide 2 (70 aa)
QDVIATKYHIVELTNARYNIHMNRDEMHQIEANKRKHRITRSCRHNSGLTYLSSSPKLFTTAAILKNNRT*

>peptide 3 (37 aa)
MDESAVILQTHMYLRVESKDSGPVWFISPRAFFSPNL*

>peptide 4 (54 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVRVFTKICICKQQSTQNKS*

Sequence

>CNT30397839
CCAAGATGTAATTGCCACAAAGTACCATATAGTCGAACTAACAAATGCAAGGTACAATATTCATATGAATAGAGATGAAATGCATCAGATAGAAGCAAAC
AAAAGAAAACACAGGATAACTCGCAGCTGCAGACACAATTCAGGGCTCACTTATTTATCAAGTTCACCAAAGCTGTTCACAACAGCAGCAATTCTCAAAA
ACAACCGAACATAACGATGCATCACACTACGGTAGAAACATAGAAACGACCAGGACGACAGACACAGGCACCATTGGAGGACATATCAAAGACACAAGAC
CTGTGAACCCAACCCACAGAGAAGCCGCTCCATTGCCAGGCACTTACTGGCCACCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTT
GTAGTCAGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTC
ACATTGTCAATTGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCATCCCACCCCTGAGCCTGAGCACCA
GGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGAT
GCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATC
TGCATCTGTAAACAACAAAGCACACAGAACAAGAGTTAGAAACCGTACAGAGAAATCTGTAGGAGATCAAACAATAAATGAATCAGATGATACAACAGAG
ATGGAATTGTAACTAAGGAATCCCCTAGAATAAGCAACTAAATGATTAACACTTCTGTAAGAACCCCTATAACAAAATATGAGCAGACTTATCAGCGCAA
TCTCTAGCCTCATGGGGAGTATATATTAATCAGTTGAACAGAACAAGCTGGTCAAGTCATGGACGAATCTGCAGTAATTCTTCAAACCCACATGTATTTA
AGAGTTGAATCAAAAGACTCAGGCCCTGTTTGGTTCATAAGTCCTAGGGCATTTTTTAGTCCCAACTTATAAGTCCCAAGTCCCTAAAAAGTCCCTACCT
GTTTGGTTCCTGGGACTTATAAGTCTCTATAAGACCATATTACAACTATAAGTCCCTATAAGTCCCTCCTTGACAGTCTTATTTCGTAAGTCCCAAATGC
CCACTTTAAGTCCCT