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Detailed information on CNT30397803


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 2e-131

BLAST vs NONCODE:
NONZMAT001268, E-value = 2e-133

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517641Triticum turgidumJuglans regia29.342.7582.61230forward
CNT30378008Triticum turgidumArabidopsis thaliana45.139.0781.92354forward
CNT30728459Triticum turgidumCorchorus capsularis33.1241.9481.54260forward
CNT30561419Triticum turgidumActinidia chinensis18.8523.4584.46148forward
CNT30238817Triticum turgidumBrassica oleracea40.1359.181.59315forward
CNT30144554Triticum turgidumMedicago truncatula46.7542.8780.11367forward
CNT30264134Triticum turgidumBrassica rapa40.1336.3381.27315forward
CNT30140632Triticum turgidumLolium perenne21.9184.3194.19172forward
CNT30605054Triticum turgidumGossypium raimondii31.2143.2182.45245forward
CNT30126269Triticum turgidumCorymbia citriodora22.847.2382.12179forward
CNT30349705Triticum turgidumEragrostis tef53.6360.0688.36421forward
CNT30365925Triticum turgidumSorghum bicolor42.6837.7388.96335forward
CNT30120413Triticum turgidumCitrus clementina28.2827.4482.88222forward
CNT3038556Triticum turgidumCucumis melo28.2828.179.73222forward
CNT30149228Triticum turgidumBrachypodium distachyon35.859.1687.19281forward
CNT30101562Triticum turgidumOryza rufipogon42.6838.7789.25335forward
CNT3048947Triticum turgidumCucumis sativus22.5512.5180.23177forward

Expression of CNT30397803

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MPLALVGRVILHRLLPFTTSRLSSFWIINFLRLIIQPSFWLGGLLIHNFHWGILIPVIGLHRNWIRDLSSLVPVLWLLVVRVRNSL*

>peptide 2 (36 aa)
MRELVIWDRGWGLEVMFNVFASLRVLVLQDEVNLVR*

>peptide 3 (83 aa)
SDAPAAASSAFCFSFSTSNLGFHVFSRIEVATFSLSAIRMLSNRMPSCIVQISIPIAAIGSKSGLSSSKYSGLEISWGFQIPL*

Sequence

>CNT30397803
CTTCTGATGCACCTGCTGCAGCCTCCTCAGCCTTCTGCTTTTCCTTCTCAACATCAAACTTGGGCTTCCATGTCTTCTCCAGGATAGAGGTGGCTACCTT
CTCATTGTCGGCAATAAGAATGTTGTCAAACAGGATGCCATCCTGCATTGTCCAGATCTCAATTCCAATAGCGGCAATTGGGTCAAAGTCAGGCTTGTCA
AGCTCAAAGTACTCAGGGTTGGAGATTTCTTGGGGCTTCCAGATTCCCTTGTAGTTGGGGTTGTCAATCAGGGGGGCATGCCACTTGCCCTTGTAGGCAG
GGTTATCCTTCATCGGCTTCTTCCATTCACCACATCCAGGCTTAGCAGCTTCTGGATCATCAATTTCCTCAGGCTCATCATCCAACCATCCTTCTGGCTT
GGTGGCCTCCTCATCCACAATTTCCATTGGGGCATCCTCATCCCAGTCATCGGGCTTCACCGCAACTGGATCAGGGATCTTAGCTCTCTCGTCCCAGTCC
TCTGGCTTCTTGTCGTCAGGGTCAGGAATAGTCTTTGATGGAATAAGTGCCGGCTCAAAATCAGCAGCAGACAGGAAGTTTGCTTTACTCTTCTCCACCC
CATCAACCAAAATTCTGACCTCATTATCCGGCTTCAAGATAGCCGTGTAGACATGAGAGAGCTTGTCATATGGGACAGAGGGTGGGGACTTGAGGTGATG
TTCAACGTATTTGCCAGTCTTAGGGTTCTTGTGCTTCAGGATGAAGTGAACCTTGTTCGTTGAACCACACTTGTCGGGACCAAAC