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Detailed information on CNT30397702


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FKW8|STR18_ARATH, E-value = 1e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30185762Triticum turgidumSecale cereale66.3226.9687.8254forward
CNT30303937Triticum turgidumTriticum aestivum100.2693.4389.84384forward
CNT30225280Triticum turgidumHordeum vulgare31.0758.3389.08119forward
CNT30555755Triticum turgidumOryza glaberrima31.0710.3284.03119forward
CNT30251799Triticum turgidumAvena sativa57.4436.7385220forward
CNT30667172Triticum turgidumTriticum dicoccoides25.0722.3890.6296forward
CNT30461799Triticum turgidumSaccharum spontaneum20.111.4885.7177forward
CNT30578553Triticum turgidumOryza barthii31.0721.0684.03119forward

Expression of CNT30397702

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRTSTYPYCSEASSAHAASGSTLSTGTAPRRCRCFSWSPWWI*

>peptide 2 (35 aa)
AATRSAVASLDRTPERQPTRNRSSLEWSAATWSTK*

>peptide 3 (44 aa)
RLRGLRWRALTALRSGSRRGTGPPWSGARRPGRRSEGCAPCREG*

Sequence

>CNT30397702
GCGGCTACGAGGTCTGCGGTGGCGAGCCTTGACCGCACTCCGGAGCGGCAGCCGACGAGGAACCGGTCCTCCTTGGAGTGGAGCGCGGCGACCTGGTCGA
CGAAGTGAGGGTTGCGCTCCTTGCCGTGAGGGGTGACGGAGAGGTAATACGGTACGTTGCGTGCGCCGGCGACGTGCCCCTTGTCAAAGTCCTCCCACAT
GCGCACGTCCACGTACCCGTACTGCTCCGAGGCCAGCAGCGCGCACGCCGCCTCCGGGTCTACACTCTCTACCGGCACCGCGCCGCGCCGCTGCCGCTGC
TTCTCATGGAGCCCATGGTGGATATAGGATTTGAGCAGAGAAGAAGAAAACAGGGAAGCTTGTTGTTGTGTTTGGCTCCGGGG