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Detailed information on CNT30397469


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 2e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696010Triticum turgidumOryza sativa7.1130.4386.984forward
CNT30674836Triticum turgidumSetaria viridis16.4351.1987.11194forward
CNT30522590Triticum turgidumSetaria italica27.8619.6892.4329forward
CNT30727960Triticum turgidumCorchorus capsularis11.8527.9485140forward
CNT30488155Triticum turgidumOlea europaea11.5233.3386.76136forward
CNT3047350Triticum turgidumPrunus dulcis6.0131.1491.5571forward
CNT30213619Triticum turgidumHelianthus annuus8.0429.9789.4795forward
CNT30684516Triticum turgidumTriticum urartu13.3860.0898.1158forward
CNT30368464Triticum turgidumSorghum bicolor27.9440.1594.85330forward
CNT30573622Triticum turgidumVitis vinifera10.3344.8583.61122forward

Expression of CNT30397469

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MKQNHKHWCLRNQHQTCYSTDALIHTHITKQAQWCLRNQHQTCYSTDALYLF*

>peptide 2 (55 aa)
MVPGSSWRSESPAYLPVWSMPCSSQITSQNLAPIWLPHWPPWMWRISLMAAAGEG*

>peptide 3 (32 aa)
MLCTSFENLLVYFTRQSSTEWTATTYKHRIHT*

>peptide 4 (43 aa)
MRPEECTGPHIREKQLERNGSIEGQLDAVDISYTRRQQSSIHL*

>peptide 5 (30 aa)
NRQPNNYKQCYVLKCSAIHTDRANCDIMKT*

>peptide 6 (29 aa)
MQLIYHTRGDNKVAYIYEIHSAISAIRST*

Sequence

>CNT30397469
AAAATAGGCAACCCAATAACTACAAGCAGTGTTACGTTTTGAAATGTTCAGCAATCCACACAGATAGAGCAAACTGTGACATAATGAAGACATGAAGCAG
AATCATAAGCACTGGTGCTTGAGAAATCAGCACCAGACATGCTACTCTACTGATGCTTTGATCCACACACACATCACTAAGCAGGCTCAGTGGTGCTTGA
GAAATCAACATCAGACATGCTACTCTACTGATGCTTTGTACCTCTTTTGAGAATTTACTAGTATACTTTACTCGGCAGAGTAGTACAGAGTGGACAGCTA
CTACTTACAAACATAGAATTCACACATAAGTATGCGACCAGAGGAATGCACGGGACCTCATATACGCGAAAAACAACTTGAACGCAATGGATCTATAGAA
GGCCAACTGGATGCAGTTGATATATCATACACGCGGAGACAACAAAGTAGCATACATCTATGAAATCCATTCTGCGATATCCGCGATTAGATCCACATAA
ACCATCCAAAATGCCTCTCATGTCAAGTAGACAATCATAATGGACAACGAATCCTGATCGGGTGAGTACTGGAAGTCAGATCTACAGGTTCGGAACCACG
CGAACCACGTCCTGCGCAAAGGGAGCAAACGGACAGATCTACGAGCCGAGAACCCAATAATCGTAGCATTCTAACAGATCGCTTTAACGCAGAAGAAGGG
CAGTAGATCTACACGCCCTAAAATCATACGAGATCCATTTCGGGAAGAAGGAAAAAGTCCAGATCCAGGCGGAGGAGGGTATACCTTGCAGGCAGTCGCA
GTTCTCGGCCTCCTTGCGGACGACGTCGAGGACGGAGTCGATGAGCTCGGCGCCCTCGGTGTAGTGACCCTTGGCCCAGTTGTTGCCAGCGCCGGACTGG
CCGAAGACGAAGTTGTCGGGGCGGAAGATCTGGCCGTAGGGGCCGGATCGGAGGGAGTCCATGGTCCCCGGCTCGAGCTGGAGGTCGGAGTCGCCGGCGT
ACTTGCCGGTCTGGTCGATGCCGTGCTCGTCGCAGATCACCTCCCAGAACTTGGCCCCGATCTGGTTGCCGCACTGGCCGCCCTGGATGTGGAGGATTTC
CCTCATGGCGGCGGCGGGGGAGGGGTAGGGTTCCGGCGAGGTTTTGGAGGGGAGGAGGAAGGGGGGAGGGGGGAGTGGAGG