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Detailed information on CNT30397375


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-98

BLAST vs NONCODE:
NONMTRT002042, E-value = 2e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30191038Triticum turgidumSecale cereale28.5655.9195.57497forward
CNT30303464Triticum turgidumTriticum aestivum45.492.51100790forward
CNT30225777Triticum turgidumHordeum vulgare31.4473.9292.14547forward
CNT30254194Triticum turgidumAvena sativa27.015094.47470forward
CNT30667831Triticum turgidumTriticum dicoccoides37.8285.9100658forward
CNT30143307Triticum turgidumLolium perenne27.3664.6792.65476forward
CNT30722465Triticum turgidumTriticum spelta43.6267.2398.29759forward
CNT30115854Triticum turgidumOryza nivara26.8461.9492.51467forward
CNT30550711Triticum turgidumOryza brachyantha26.556691.34462forward

Expression of CNT30397375

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSWPRRRTDLPPDKNCSKKHDVYRHNPDGFIYTHNSYEFAPI*

>peptide 2 (47 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVRVLTKICICRE*

>peptide 3 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICIPPRRRRTRWRVDSFWML*

Sequence

>CNT30397375
ATAAAAACTAGAAGAGGCAACCAATTCAACCGGAAGGTAAAATGTGCATAGGCAGATTAGTTCAAAGTTCACTTATTCATACTTGACCGTACTGCTATAG
CAGCAACTGTTTAAACGAAACCAACACATCTCACAACTGTTTAAACGAAACCAACACATCTCACAACTGTTTAAACGAAACCAACACATCTCACAACTGT
TTAAACGAAACCAACACATCTCACAGGGACTCGATGGTCCATGAAACCAGACACGGTAGGACTTGACACAAACGAGACTTAACACTTCACACGAGCGACA
GGGGCACCCACCAGAGTACTCAGGGCATTTACTGACCACCGCGGAGGCGGAGCACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGCGAGGGT
GCGACCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTG
TCTGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCATACCACCTCGGAGACGCAGGACAAGGTGGAGGGTGGACT
CCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG
GATCTTAGCCTTGACATTGTCGATGGTATCAGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATCTGCAGAGAA
TAATCACAAACAGTATGGTGAGCCTCTAGAAGCAGACCAAGCAAACCCACATTATAAATACTAATGCTTCTATACATCTATACATCAAGCAATAGAGAAT
AGACAAACAGCAGCAGCATATTTTCTTGATGAATTGAACAGAAAAGGCAGTATAATCATCAGAGGAAGATGTACACACATTATTGGGTTAGATAATAAAG
AGTTTAAGCAGATCTATCAAGGAGGACGACAGATTTAGTAGAGAAATCATGCATATGAGCAAGCAAACTAACATTACAAGTACGAATGAATTTTATAAGC
CTTTATACATCACGCTATAAAGGATAAACAGTGGGCAGCAGCATATTTTCCTCATTAATTAAAGAGGAACTGACAGGCAATGCACCCCAGAAAATCTACA
GACATCTTTTATCTAAAGGATTCCACATAGCTGTCGGATATTATCATCATCCAAAAAATAAACCTAGCTTAGAGAGAGAAAGCAATCAACAATCCTAGGA
CTATAAGTTTAGGACGATCCTGGTACAACAAGAATATGATCACGAGCGACGGATCTGGCACAAGGCAACAAGAATATGAAGACTTCGAATCTATCAAGCA
GGAACGGGCGTCCTGGTAGTAGTGGTGAAAACATGCATATGAGATGAGACGGCGTCATGAGTTGGCCCCGAAGACGAACAGATCTACCCCCTGATAAAAA
TTGCAGTAAAAAACACGACGTCTACAGGCATAACCCCGACGGATTCATCTACACGCATAATTCCTACGAATTCGCACCTATCTAACGATTGATCGGGACA
ACAAGTTTCGTTCCCGCAACCCCAGATCGGAGCAGAACCGGGCAAAATTCGGCGGTAATAATCCTCCAACTACCAGGGAGACGTGGATCCAGACGGTACG
GGGAGAGGGGAAGGGGATCGCCGTACCTTGGGGCGGCGGG