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Detailed information on CNT30397001


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000582, E-value = 2e-130

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30505424Triticum turgidumNicotiana attenuata46.4892.0694.64429forward
CNT30595740Triticum turgidumOryza meridionalis14.7352.9296.32136reverse complement

Expression of CNT30397001

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGRDFSVIHGSPIGKPYPSSVASLRSLDFSNLAN*

>peptide 2 (61 aa)
MFDAIENHALDGCPGIEKEGRFQRRKAMGRDFSVIHGSPIGKPYPSSVASLRSLDFSNLAS*

Sequence

>CNT30397001
CGCTAGTTGCTCAAAAAATCGTATAAAAATCAAGCAAGAAAACGGATGCGCTAACGCGCAACGGCTTTCGCGCTAGTTGCTCAATCCGTTGCTTGCTTCT
CTTCTGTCTTGGAAAAGTGAGGATTTCCTATCTGATCCAAGGGAAGGAAGAGAGGTGGAAAGTGTTGCTGTGTCAAATCGAGATTGTGTGGGTGTCCGCT
CATGTTCGACGCCATCGAAAATCATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGAGATTTTTCT
GTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAGCTGAAACATCTGAGTAG
CTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGAGATT
TTTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCAAACTGAAACATCTG
AGTAGCTAAAGGAAGGAAAAGCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAGAAATCCGAAGCGGTTTCATTC
GATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCGTAGTTAGAAAAGTTGCCATAGCGCGCCCTACGGAGTTGTACAAAGTCAGCAACC
GTTTTGGGGCGCAAGCATAGGCAACACAGGACTGATGATGGGGTGGGATTTGGAATTGGAATTGGAAGGTTTGACAGCCAAGGAGCGGCAAATAAGTCAC
GCTTCGACATAGCTGAAGCTCTA