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Detailed information on CNT30396961


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30221733Triticum turgidumHordeum vulgare7.9125.6392.5981reverse complement
CNT30435234Triticum turgidumAegilops tauschii7.9125.3993.8381forward
CNT30661765Triticum turgidumTriticum dicoccoides11.2327.9197.39115forward
CNT3010052Triticum turgidumZea mays7.9132.6690.1281forward

Expression of CNT30396961

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MANVSHPCSQFILGPCVCVMVFRISCILVCAVRPQVPRIWSLMLLLKSRAIKLPQRDI*

>peptide 2 (44 aa)
MGDGEERNLLGQLDRVPSLHVGFAPLHNSKCLCKHDTVLYICMS*

>peptide 3 (29 aa)
MTYVLQSDFISVCYGNIKNICAVKIFIVL*

Sequence

>CNT30396961
CCTCTTTTTGTGTCTAACTAATAGTAGCAATATACAGTATATATGTCAAGTATCCGATTCACGGACCAACTAGTGAACTGAAGCGCTTGTTCTTGTTGCT
GCTGCTGTTGTTGCAGGACATGAAGCAGTACAGCAGCAGCCAGTTTGCAAGGATGCTCAAGATTGCTGTCTAGTGCCTCACATCTCCTGAAAAGCACTTT
TCAGAGGTACACCACGGCACGCAGATCAACCTCACCCTGAGCGCCTGCTGGTGGCTGCACTGCATCACGCGCATCCGCGAGTGCGACGCCAGGCTCGTCG
TGCCCATGGGGGAACAGGTGAAGTGTCCAGCTATGCTTCTCACTGACCAGTCACACTGACAAGTCGAACGCGCAGGGAGGGACGACCCTCGTTACCACTC
TGTACGCTGATCTTGATTCGTGGTATGGCTAATGTTTCCCATCCCTGCTCTCAGTTCATCCTTGGACCTTGTGTTTGTGTGATGGTTTTTCGAATCTCTT
GCATACTGGTGTGTGCAGTACGTCCGCAGGTGCCACGGATCTGGAGCCTGATGTTGCTGCTGAAGAGCAGAGCGATCAAGCTCCCCCAAAGGGACATCTA
GAGGGCTTTACTCATCAGGGGGAGCTAGATGTATGATGTACGGCAACGGGAATGGGAGATGGTGAGGAAAGGAACCTGCTGGGACAACTAGATCGAGTCC
CTTCTCTACATGTTGGTTTTGCTCCCTTGCACAACAGTAAATGCCTCTGCAAACATGATACAGTACTATATATATGCATGTCATAGTCAGTAGTTAGCGT
GTGGCAATGAAGTGAACCATCAAATTACATTTTGCTTTGTCTTGTTGATAATGACATATGTCTTGCAATCAGATTTCATTTCTGTTTGTTATGGTAATAT
AAAAAATATTTGTGCTGTCAAAATTTTCATAGTGCTATAGAACATCTAGTAACAAGAATATAAAATTATAAATAGCAAAAAATTCTTGTCTTGCGCGGTC
TAAGTCCAAGGAAATAAAAAAAAA