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Detailed information on CNT30396890


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 1e-98

BLAST vs NONCODE:
NONGMAT000502, E-value = 1e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30302595Triticum turgidumTriticum aestivum93.5910098.66599forward
CNT30225636Triticum turgidumHordeum vulgare7053.3393.97448forward

Expression of CNT30396890

Peptides detected in this lncRNA

>peptide 1 (31 aa)
QAHYFKVDLFILNGTDVPATVCTKPQDSMVH*

>peptide 2 (53 aa)
MPSLSWILALTLSMVSELSTSRVIVLPVRVFTKICIPPRRRSTRWRVDSFWML*

>peptide 3 (28 aa)
MPSLSWILAFTLSMVSDDSTSRVMVLPVS

>peptide 4 (63 aa)
HRHITSKLTYSYLTVQMYLQLFAPNHRTRWSIKAADTVRLHTNETSLEQRRHRVQQQQQQVER*

Sequence

>CNT30396890
CACAGGCACATTACTTCAAAGTTGACTTATTCATACTTAACGGTACAGATGTACCTGCAACTGTTTGCACCAAACCACAGGACTCGATGGTCCATTAAAG
CAGCAGACACAGTACGACTTCACACAAACGAGACATCACTTGAACAAAGGCGACACAGGGTACAGCAGCAGCAGCAGCAGGTCGAACGATAGGGCAATTA
CTGACCACCACGGAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAG
ATAAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTCTCAACCTCAAGGGTGATAGTCT
TGCCGGTGAGGGTCTTCACGAAAATCTGCATACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCG
ACCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCA
GACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGTG