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Detailed information on CNT30396495


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 2e-14

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378673Triticum turgidumArabidopsis thaliana44.6957.7496.53720reverse complement
CNT3089926Triticum turgidumSolanum tuberosum21.7915.8797.44351reverse complement
CNT30543266Triticum turgidumBrassica napus42.425.1796.49683forward
CNT30346087Triticum turgidumEragrostis tef52.6482.0199.76848forward
CNT30595568Triticum turgidumOryza meridionalis23.8498.9798.96384reverse complement
CNT3099709Triticum turgidumOryza rufipogon23.0317.04100371forward

Expression of CNT30396495

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKVVRELGLERRETVRFLSTVGVKGRTARSQP*

>peptide 2 (93 aa)
MPGSRRKRSGRTLGPAGEHAGSGSAHLLTPFEALSRVNRSRLAELLPFSFQSSPFSSSVGAFSLLIRVEVAREQSVPPCHSREDLNSRSRLLS*

>peptide 3 (68 aa)
GRSVNRGRFLVTRPGDIRSENADMSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

Sequence

>CNT30396495
CGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACA
CGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACA
CGAAAGTGACGAAGTTGCTTTGACTACTGAACCATGCCTGGATCGCGAAGAAAAAGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGCTCCG
GCTCCGCGCACCTGCTGACACCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGCCGAACTCCTTCCTTTCTCATTTCAGTCCTCGCCTTTTTC
ATCTTCCGTAGGGGCCTTTAGTCTTTTGATTAGAGTGGAGGTCGCGAGAGAGCAGAGCGTACCGCCCTGCCATAGTCGCGAGGATCTTAATAGTCGGTCG
CGACTGTTGTCATAGTCAACGACGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACAC
AGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTAT
CTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCT
GCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATT
CCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGAG
TACCAACGGCTAGACGGTAAGACCCCGTGCACCTTGACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGAGGTGGTGACACACA
ACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGATCATTCGGGGGGGGCGGGACACTGCAAGGTGGGTAGTTTATCTG
GGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGA
CCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATTACAG
GCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGT
TCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAGC
CCTAGTACGAG