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Detailed information on CNT30396291


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696190Triticum turgidumOryza sativa80.7876.692.6311reverse complement
CNT30294378Triticum turgidumTriticum aestivum89.8716.9598.84346reverse complement
CNT30224357Triticum turgidumHordeum vulgare100.7825.796.65388reverse complement
CNT30585847Triticum turgidumMusa acuminata50.3929.7182.99194reverse complement
CNT30553747Triticum turgidumOryza glaberrima75.8420.5292.47292forward
CNT30135270Triticum turgidumLolium perenne77.928.7391.33300reverse complement
CNT30689031Triticum turgidumTriticum urartu1006.999.22385reverse complement
CNT30344054Triticum turgidumEragrostis tef50.6535.6588.72195forward
CNT30705533Triticum turgidumPrunus avium32.9914.7783.46127forward
CNT30150293Triticum turgidumBrachypodium distachyon49.8711.3990.62192forward
CNT30585636Triticum turgidumEchinochloa crusgalli82.65.5488.05318reverse complement

Expression of CNT30396291

Peptides detected in this lncRNA

>peptide 1 (29 aa)
NNKEPPGLIKLRKLTQKEIFWKLRCGIQT*

Sequence

>CNT30396291
AATAATAAAGAGCCGCCCGGGTTAATAAAACTGAGAAAATTAACTCAGAAAGAAATTTTTTGGAAGCTCCGTTGCGGGATTCAGACCTAACCATTCAAGG
AGAAGCAGTGGGAACGACAGAACCTATGATTCCATAGGATTTTATTGAAAAGAATCCTAACACTTCATTGGGTGGGATGGCGGAACAAACCAAAAAAATT
GTCTTATTTGGTAAGTTTATAAATTAACAAATAAGATAGGAAAGAGTAAATATTTGCCCGCGAAATTCTTATTGAATTAGAATACTTTACCGCGATTCAA
TAAGAGTAAAAATAAGGATTTTTTTAAGAAGGATTACATTATCTATAAATATAGAATTTAGATAAATATACACACACATCTGGAT