Detailed information on CNT30396189


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30249262Triticum turgidumAvena sativa24.827.4794.15205forward
CNT3040451Triticum turgidumMarchantia polymorpha21.9130.8393.37181reverse complement

Expression of CNT30396189

Peptides detected in this lncRNA

>peptide 1 (49 aa)
LPCYDFTPVEDPTVVCANKTTKGLCGTSGTQKSWVIIGPMLRAKPIPRV*

>peptide 2 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

>peptide 3 (34 aa)
YLVTTSPQSKTPPWYAPIRPPKAFVALVVHRSHG*

>peptide 4 (72 aa)
MKLKSLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPMITHDFCVPLVPQRPLVVLLAHTTVGSSTGVKS*

>peptide 5 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 6 (47 aa)
MTSSPHGPYGLGHTRATMAMTMGSKAVRRSESGKIASVRIVLRNSGT*

Sequence

>CNT30396189
CTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGGTACACAGAAGTCAT
GGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATC
CGCGATTACTAGCGATTTCAACTTCATGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTTC
CCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACTAGCAGTCC
CTGGTGAGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACA
CACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCCGCAACTCGGGAAC
ATGAAGTTGAAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCG
CCCGAAGCATCGGACCAATGATCACCCATGACTTCTGTGTACCACTAGTGCCACAAAGGCCTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTCTTC
GACTGGGGTGAAGTCGTAACAAGGTA