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Detailed information on CNT30396078


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-96

BLAST vs NONCODE:
NONMTRT002043, E-value = 8e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189291Triticum turgidumSecale cereale3485.7593.17644forward
CNT30304338Triticum turgidumTriticum aestivum31.2694.2792.23592forward
CNT30253560Triticum turgidumAvena sativa25.7167.9293.43487forward
CNT30666357Triticum turgidumTriticum dicoccoides33.0575.1596.81626forward
CNT30127456Triticum turgidumCorymbia citriodora24.558.4490.73464forward
CNT30686462Triticum turgidumTriticum urartu39.0739.797.57740forward
CNT30722325Triticum turgidumTriticum spelta25.1862.1196.02477forward
CNT30595696Triticum turgidumOryza meridionalis24.4543.5692.66463forward
CNT30107357Triticum turgidumOryza longistaminata24.4561.9891.36463forward
CNT30150050Triticum turgidumBrachypodium distachyon24.8235.1392.34470forward
CNT30592842Triticum turgidumEragrostis curvula24.2956.5891.96460forward

Expression of CNT30396078

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSTSDTSSSIRAWRENYDTKLILNSTIIKS*

>peptide 2 (50 aa)
MNLSRRSGRTSTQIMHMRLYTAKGVDLNYKQIYVVENKQTAATYFSSLSQ*

>peptide 3 (53 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICICREEYQTEW*

>peptide 4 (53 aa)
MPSLSWILALTLSIVSELSTSRVMVLPVRVFTKICMPPRRRSTRWRVDSFWML*

>peptide 5 (81 aa)
MRERIGQQISFPQHQIGAETDQIPQYYTSIQPSNQRRSRRHGERGGKLGTLRRWGRSIRRAWSRSETRLGGDLLVPCLGAVV

>peptide 6 (30 aa)
MLIIQRKKPSFLRGNQSTILRLLGRSRYRI*

>peptide 7 (30 aa)
MIQHSCRTCLSYRERSLAFSGEINLQSYAY*

>peptide 8 (30 aa)
MLIIQGKKTSFLRGNQSTILRLLGRSRYRI*

>peptide 9 (32 aa)
MSTRDTSGSIRASGETELPPTRLIQNSTKTKI*

Sequence

>CNT30396078
CGGGTTTTGAATTAAGTGTACAACTATGTTTAAAACGCCATGATCAGAAGCTGTGGTGGGTGTACAGATTGACTCTTATTACATGACTATTCCTAAGATT
GATTCTGATTGGGTTAGGGGCATGTGATTTTGTTCTCCCGGTGCAACGCACGGGCCCTTTTGCTAGTTCATTACTTAAGGATACTGCTGTGCCAGCAACG
GTTTCAACCAACATAACATGGGGACTCGATAGTTTTCAAACCAACACATAGGACTGACACAAACGAGAAAACAGTTCAAACGATCGACAGGGCACCACCA
ACCGGACGACCAAGGATAAACCAGCAGGTACAACGCCAGGACAATTACTGACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGT
TGTAGTCTGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT
GACATTGTCGATTGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATGCCACCACGCAGGCGCAGCACA
AGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGAA
TGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCAACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGAT
CTGCATCTGCAGAGAAGAATACCAAACAGAATGGTAAGCCTCAAACGGCAGCAGCATATTTTAATCAGATGCACCAGAAGAATCTAAAGACCATTTATCT
CAAGGATTCCACATAGCTGCCGGACATGCTTATCATCCAAGGAAAAAAGACTAGCTTTCTTAGGGGAAATCAATCTACAATCCTACGCCTATTAGGAAGG
TCACGGTACAGAATATGAGCACGCGCGACACATCAGGCAGTATACGCGCTTCTGGAGAGACAGAATTACCACCCACAAGGCTAATACAGAATTCGACCAA
AACAAAGATCTAAATGAATCTATCGCGAAGGAGCGGACGAACCAGTACACAAATCATGCATATGAGACTATATACGGCTAAAGGAGTTGACCTCAACTAC
AAACAGATCTATGTGGTAGAGAATAAACAAACGGCAGCAACATATTTTTCTTCACTATCTCAATGATCCAACATAGAGAAGTCTGTTAGCTTTTTCCGAG
AAGCTAACAGACTGTCGCGCAGATGCACCAAAAAAAAAAAATCTAAAGACCATTTATCTCAATGATCCAACATAGCTGCCGGACATGCTTATCATACAGA
GAAAGAAGCCTAGCTTTCTCAGGGGAAATCAATCTACAATCCTACGCCTATTAGGAAGGTCTCGGTACAGAATATGAGCACGAGCGACACATCAAGCAGT
ATACGCGCCTGGAGAGAGAATTACGACACAAAGCTAATATTGAATTCGACCATAATAAAGAGTTAAAGACGTATCTATCCCTTCAATCTACCCCTTCAAT
CTACACGCAAAAATCCCTAAGAATTCGCCGAAGCTTCATCGACCTAACATGCGCGAACGGATCGGACAACAAATTTCGTTCCCACAGCATCAGATCGGAG
CAGAAACCGACCAAATTCCACAATACTACACCTCCATCCAACCATCTAATCAACGCCGATCTAGACGACACGGGGAGAGGGGAGGCAAGCTCGGTACCTT
GAGGCGGTGGGGGAGGAGTATTCGACGAGCGTGGAGTCGATCGGAGACGAGATTGGGTGGGGATTTGTTGGTTCCGTGCCTGGGAGCTGTTGTG