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Detailed information on CNT30396065


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225212Triticum turgidumHordeum vulgare16.3626.5291.43105forward
CNT30666649Triticum turgidumTriticum dicoccoides28.1934.5493.92181forward

Expression of CNT30396065

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVRCARRRHGPCRSPPTCARPRTRTAPRPAVRKPPRGQHSLRALPRRCRCF*

>peptide 2 (67 aa)
MRTSTYPYCPEASSAQAASGSTLSTGTAAPLPLLLREPMVYGGFEQGRRRQGGVLMCLAPGAVERIG*

>peptide 3 (62 aa)
MIKGEISIQLVALLVGTKSMPKTQDAYTGIVPSFAMEINSSSALNTLPPLILHKMLDNTSTS*

>peptide 4 (78 aa)
MALVEVLPHAHVHVPVLPRGQQCASRLGVNTLYGHCRAAAAASEGAHGVWRIRAGKKKTGGRVDVFGSGGCGADWVMP*

Sequence

>CNT30396065
AGGTTCGCGGCCAGTGGGAGAGATCAAAGTGTTACGCATGGGGCGACCTGAAGAATAATACATTTTCTTAGGTTCTTTTTGCAAGATACAATGATAAAAG
GGGAAATCAGTATTCAGCTAGTAGCACTTTTGGTTGGAACAAAGTCCATGCCAAAAACTCAGGATGCATATACAGGCATAGTGCCTTCTTTTGCCATGGA
AATTAATTCCTCCTCGGCTCTGAACACGCTTCCTCCTCTTATTCTTCATAAGATGTTGGATAATACTAGTACATCGTAGTACTTACTCTAGATACGGAAT
TGATGGATCAGTGGTGGCTGGCTGCCGGCTGCGGGTAGCTTGCGCTCTTGAGCAAGGAGAGGGGTGACGGAGAGGTAGTATGGTACGTTGCGCGCGCCGG
CGACATGGCCCTTGTCGAAGTCCTCCCACATGCGCACGTCCACGTACCCGTACTGCCCCGAGGCCAGCAGTGCGCAAGCCGCCTCGGGGTCAACACTCTC
TACGGGCACTGCCGCGCCGCTGCCGCTGCTTCTGAGGGAGCCCATGGTGTATGGAGGATTCGAGCAGGGAAGAAGAAGACAGGGGGGCGTGTTGATGTGT
TTGGCTCCGGGGGCTGTGGAGCGGATTGGGTGATGCCTTGAT