« Back to Triticum turgidum search


Detailed information on CNT30395877


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 9e-41

BLAST vs NONCODE:
NONSTUT000620, E-value = 7e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30190923Triticum turgidumSecale cereale48.548.3996.9226forward
CNT30226003Triticum turgidumHordeum vulgare44.2148.4795.63206forward
CNT30666465Triticum turgidumTriticum dicoccoides96.57100100450forward

Expression of CNT30395877

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAGTTQLHTILRVHLLIIQPPKPLTSLSM*

>peptide 2 (31 aa)
MRRCWSGGIPSLSWILAFTLSIVSDDSTSRVM

>peptide 3 (35 aa)
HISRISSILHDQFNARICRQIATQVWQEQHNYTRY*

>peptide 4 (70 aa)
MSRHLLATTQAEHQVEGGLLLDVVVSQGAAILELLAGKDEALLVRGDSLLVLDLGLHIVDRVRRLDLKGDG

Sequence

>CNT30395877
CCACATTTCAAGAATTTCCTCAATACTTCATGACCAGTTCAATGCAAGAATCTGCCGACAAATAGCAACACAAGTATGGCAGGAACAACACAATTACACA
CGATATTAAGGGTTCACTTATTAATCATCCAACCTCCAAAGCCACTCACATCATTAAGTATGTAAGCACAACCAAACATAACAGAGATAGAAAGACGACC
AAAACAGAAACTGAAAACACCATTGAGTACACCGACGAGACAGAAGCAGCGCCATGAGCAGGCACTTACTGGCCACCACGCAGGCGGAGCACCAGGTGGA
GGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATTCCCTC
CTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGACGACTCGACCTCAAGGGTGATGGT