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Detailed information on CNT3039583


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 1e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674625Marchantia polymorphaSetaria viridis54.3277.4693.18220forward
CNT30524662Marchantia polymorphaSetaria italica60.2530.1693.44244reverse complement
CNT30513357Marchantia polymorphaJuglans regia60.2536.894.26244forward
CNT30503447Marchantia polymorphaNicotiana attenuata60.2514.5894.26244forward
CNT30221722Marchantia polymorphaHordeum vulgare60.492594.69245forward
CNT30384181Marchantia polymorphaTriticum turgidum60.2537.4293.03244forward
CNT30511396Marchantia polymorphaSolanum lycopersicum45.4320.1191.3184reverse complement
CNT30552256Marchantia polymorphaOryza glaberrima20.7432.4396.4384forward
CNT30437708Marchantia polymorphaAegilops tauschii26.1733.9795.28106forward
CNT3067537Marchantia polymorphaLeersia perrieri26.9136.9590.83109forward
CNT30412183Marchantia polymorphaPapaver somniferum97.7814.0691.16396reverse complement
CNT30116966Marchantia polymorphaOryza nivara23.212.6292.5594reverse complement

Expression of CNT3039583

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNSAAVSKVNLFGNLRIYTYFQLPEAFRRLLRPSSSLGA*

>peptide 2 (39 aa)
MNSAAVSKVNLFGNLRIYTYFQLPEAFRRLLRPSSSLGA*

>peptide 3 (49 aa)
PRFHGLGCSHFACRYYENRFCFLFLWLLRCFSSPGCLLSAYEFSSSFKG*

>peptide 4 (41 aa)
TPFSRFRLFPFRLPLLRESLLLSFPLATKMFQFARLSLVCL*

Sequence

>CNT3039583
ACCCCGTTTTCACGGTTTAGGCTGTTCCCATTTCGCTTGCCGCTACTACGAGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCG
CCAGGTTGTCTCTTGTCTGCCTATGAATTCAGCAGCAGTTTCAAAGGTTAACCTATTCGGGAATCTCCGGATCTATACTTATTTTCAGCTCCCCGAAGCA
TTTCGTCGCTTGCTACGCCCTTCCTCGTCTCTGGGTGCCTAGGTTGTCTCTTGTCTGCCTATGAATTCAGCAGCAGTTTCAAAGGTTAACCTATTCGGGA
ATCTCCGGATCTATACTTATTTTCAGCTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCTCGTCTCTGGGTGCCTAGGTATCCACCGTAAGCCCTTT
TTCGT