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Detailed information on CNT30395817


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 2e-114

BLAST vs NONCODE:
NONZMAT001268, E-value = 2e-157

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676366Triticum turgidumSetaria viridis28.255.7590.37218forward
CNT30278532Triticum turgidumChenopodium quinoa61.9743.5980.38479forward
CNT30629341Triticum turgidumVigna unguiculata66.3646.9878.56513forward
CNT30709122Triticum turgidumGlycine max13.5829.8384.76105forward
CNT30164689Triticum turgidumPistacia vera16.9523.8287.02131forward
CNT30190468Triticum turgidumSecale cereale10079.9497.28773forward
CNT30686114Triticum turgidumTriticum urartu77.3610099.5598forward
CNT30120416Triticum turgidumCitrus clementina11.944.0286.9692forward
CNT30585446Triticum turgidumEchinochloa crusgalli15.7840.496.72122forward
CNT30116414Triticum turgidumOryza nivara23.0363.5787.08178forward
CNT30725707Triticum turgidumLupinus angustifolius18.1125.4182.14140forward

Expression of CNT30395817

Peptides detected in this lncRNA

>peptide 1 (43 aa)
GTQKGPLNRLLQPPQPSAFPSQHQTWASRSSPRWLWLPSHHRR*

>peptide 2 (40 aa)
MVFDGISAGSKSSADRKFALLFSSPSTKILTSLSGFKIAV*

>peptide 3 (89 aa)
WNSERSSESAAAASSAFCFSFSTSNLGFQVFSKMAVATFSSSAIRMLSKRMPSCIVQISIPIAAIGSKSGLSSSKYSGLGISWGFQIPL*

Sequence

>CNT30395817
CTGGAACTCAGAAAGGTCCTCTGAATCGGCTGCTGCAGCCTCCTCAGCCTTCTGCTTTTCCTTCTCAACATCAAACTTGGGCTTCCAGGTCTTCTCCAAG
ATGGCTGTGGCTACCTTCTCATCATCGGCGATAAGAATGTTGTCAAAAAGGATGCCATCCTGCATTGTCCAGATCTCAATTCCAATAGCGGCAATCGGAT
CAAAGTCAGGCTTGTCAAGCTCAAAGTACTCTGGGTTGGGGATTTCTTGGGGCTTCCAGATTCCCTTGTAGGCAGGGTTCTGCTTCATTGGCCTCTTCCA
TTCACCACATCCAGGTGCCTCTTCACACTTGGGGTTGTCGATCTTCGGTGCCTCCCATTCGCCATCCTCCTCATCATCCCAGTCTTCGGGCTTAGCAGCC
TCTGGGTCATCAACTTCCTCGGGCTCATCATCCAACCATCCTTCTGGCTTGGTGGCCTCCTCATCCAGAATTTCTGTTGGGGCATCCTCATCCCAGTCAT
CGGGCTTCACTGCAGCTGGGTCAGGGATTTTAGCTCTCTCGTCCCAGTCCTCTGGCTTCTTGTCATCAGGGTCAGGAATGGTCTTTGATGGAATAAGTGC
TGGCTCAAAATCGTCAGCGGACAGGAAGTTTGCTTTGCTCTTCTCCTCCCCATCAACCAAAATTCTGACCTCGTTATCCGGCTTCAAGATAGCCGTGTAG
ACATGAGAGAGCTTGTCATATGGGACAGAGGGTGGGGACTTGAGGTGATGTTCAACATATTTGCCAGTCTTGG