« Back to Marchantia polymorpha search


Detailed information on CNT3039554


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 8e-61

BLAST vs NONCODE:
NONCQUT009402, E-value = 1e-12

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697233Marchantia polymorphaOryza sativa26.7825.9993.8898forward
CNT30677012Marchantia polymorphaSetaria viridis44.2622.9886.42162forward
CNT30524410Marchantia polymorphaSetaria italica44.2620.7285.8162forward
CNT30184672Marchantia polymorphaSecale cereale35.7939.784.73131forward
CNT30297056Marchantia polymorphaTriticum aestivum44.2647.3785.8162forward
CNT30390869Marchantia polymorphaTriticum turgidum42.933.485.99157forward
CNT30555350Marchantia polymorphaOryza glaberrima26.7817.1993.8898forward
CNT30438779Marchantia polymorphaAegilops tauschii44.2625.6785.8162forward
CNT30249379Marchantia polymorphaAvena sativa26.2324.1892.7196forward
CNT30662842Marchantia polymorphaTriticum dicoccoides44.2628.9885.8162forward
CNT30135675Marchantia polymorphaLolium perenne26.2325.3391.6796forward
CNT30216944Marchantia polymorphaKalanchoe fedtschenkoi38.820.1783.8142forward
CNT30210701Marchantia polymorphaHelianthus annuus48.0920.0782.39176forward
CNT30353507Marchantia polymorphaEragrostis tef27.877.9892.16102forward
CNT30365046Marchantia polymorphaSorghum bicolor32.7912.4688.33120forward
CNT30597113Marchantia polymorphaOryza meridionalis26.7813.0793.8898forward
CNT30356872Marchantia polymorphaLactuca sativa40.7125.6983.22149forward
CNT30371232Marchantia polymorphaOryza glumipatula26.789.2793.8898forward
CNT30103835Marchantia polymorphaOryza rufipogon26.7820.4693.8898forward
CNT30578126Marchantia polymorphaOryza barthii26.7811.6493.8898forward
CNT30498372Marchantia polymorphaDigitaria exilis26.2320.2191.6796forward
CNT30117952Marchantia polymorphaOryza nivara26.787.8893.8898forward

Expression of CNT3039554

Peptides detected in this lncRNA

>peptide 1 (75 aa)
DLICSLQARNALGASLQNCQQIVSERIAQVSGQVLDGALAGHVRLDEESEHGEHGQSSVLDLLHLQQGELVGVLS*

>peptide 2 (64 aa)
MKNPSMENMASRPFLISFTFNKANWSGSLARPKGSNAPPGWRRSRMTSAMTAAARFTGMLAPKY*

Sequence

>CNT3039554
TGATCTGATCTGTAGTCTACAGGCTAGGAACGCGCTCGGCGCTTCCTTGCAGAACTGTCAGCAAATTGTTTCCGAACGGATCGCTCAAGTGAGCGGCCAA
GTTCTCGACGGGGCCCTCGCCGGTCACGTACGCCTGGATGAAGAATCCGAGCATGGAGAACATGGCCAGTCGTCCGTTCTTGATCTCCTTCACCTTCAAC
AAGGCGAACTGGTCGGGGTCCTTAGCTAGACCCAAGGGGTCGAATGCGCCACCGGGGTGGAGGCGGTCGAGGATGACCTCGGCGATGACAGCGGCAGCTA
GGTTCACTGGGATGCTGGCACCGAAGTATTGAAGGGTGTTTCCTTCGAGCAGAAGAGCTCCGGTCT