Detailed information on CNT30395407


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671080Triticum turgidumSetaria viridis44.9630.0687.85107forward
CNT30583094Triticum turgidumEchinochloa crusgalli32.7738.8185.978forward

Expression of CNT30395407

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MRASPFCFHSLLLPWKITVCTTHSKRADGLTLMSEVPSPLGPFYTREIV

>peptide 2 (57 aa)
TPANTKRRVAMNSATYALTDVALKESPQLPNASFTILLSLSLATLENYCLYHTLKEG*

>peptide 3 (59 aa)
AGEHEEEGGDELRHIRPDGRGAEGVTAAPECELHHSAFTLSCYPGKLLSVPHTQRGLMA*

Sequence

>CNT30395407
ACGCCGGCGAACACGAAGAGGAGGGTGGCGATGAACTCCGCCACATACGCCCTGACGGACGTGGCGCTGAAGGAGTCACCGCAGCTCCCGAATGCGAGCT
TCACCATTCTGCTTTCACTCTCTCTTGCTACCCTGGAAAATTACTGTCTGTACCACACACTCAAAGAGGGCTGATGGCTTAACACTGATGAGCGAAGTCC
CTTCACCATTAGGACCCTTTTATACACGCGAAATCGTG