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Detailed information on CNT30395374


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L3D9|PSAC_SACHY, E-value = 3e-50

BLAST vs NONCODE:
NONORUT006211, E-value = 1e-79

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381120Triticum turgidumManihot esculenta12.4653.2382.58132forward
CNT30201080Triticum turgidumPisum sativum25.2113.4184.27267forward
CNT30220769Triticum turgidumHordeum vulgare88.8693.1793.73941forward
CNT30258499Triticum turgidumAvena sativa21.1574.1793.75224forward
CNT3017910Triticum turgidumZea mays90.7539.8492.92961forward
CNT30609476Triticum turgidumGossypium raimondii16.6223.2884.09176forward
CNT30680248Triticum turgidumTriticum urartu25.6891.5898.16272forward
CNT30434219Triticum turgidumPapaver somniferum24.6572.386.59261forward
CNT30327547Triticum turgidumAsparagus officinalis84.6128.4483.59896forward
CNT30585663Triticum turgidumEchinochloa crusgalli44.5777.591.95472forward
CNT30551956Triticum turgidumOryza brachyantha48.4420.2987.72513forward

Expression of CNT30395374

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MSGRQIHISYNPHNLRFSARKQFAWLYIHPRVSFLIHMLDKLVHIECILYMYRKFLRNVTLDL*

>peptide 2 (59 aa)
MNLQISAKQQVLPRKITHDKMIKTRYVLTRKAHARLFRAQASSVKRNQTIRVKFFVTYQ*

>peptide 3 (70 aa)
KKSKRSREENNPICPLYITSIRKWNNHEFRVIGQAAKVAKVVINPFNKIDPNESPSIPNLQWKSKTSIHL*

>peptide 4 (48 aa)
MKVHRFPISSGNRRHLSIYNPPLIGLRDPPVGNDNRTHKSLEGILINK*

>peptide 5 (30 aa)
KKVKGLAKKIILFAHYTLRASGNGIITNSV*

Sequence

>CNT30395374
AAAAAAAGTAAAAGGTCTCGCGAAGAAAATAATCCTATTTGCCCACTATACATTACGAGCATCAGGAAATGGAATAATCACGAATTCCGTGTAATTGGCC
AAGCTGCTAAAGTAGCTAAAGTAGTGATAAATCCTTTCAATAAAATAGATCCTAATGAAAGTCCATCGATTCCCAATCTCCAGTGGAAATCGAAGACATC
TATCCATTTATAATCCTCCTTTAATTGGATTAAGGGATCCTCCAGTTGGAAATGATAACAGAACGCATAAGTCATTAGAAGGAATTCTAATAAACAAATA
GATATAGTATACCACCTAACGACTTTGTTTCCCTTATGAGGTAAAAAGAAAATTAATGAACCTGCAAATATCGGCAAAACAACAAGTATTACCAAGGAAA
ATAACTCATGATAAAATGATAAAGACAAGATACGTTTTGACTAGAAAAGCCCATGCTCGATTATTTCGAGCACAGGCTTCTTCGGTAAAGAGAAATCAGA
CGATTCGAGTGAAGTTTTTTGTAACGTATCAATAAGATAGAGCCATGCTATGTGTTGTTTCAGGCCCTAAATAAACGCGGACACTTAAAAAATATGTCGG
GCAGGCAGATTCACATCTCTTACAACCCACACAATCTTCGGTTCTCGGCGCGGAAGCAATTTGCTTGGCTTTACATCCATCCTAGGGTATCATTTCTAAT
ACATATGTTGGACAAGCTCGTACACATTGAGTGCATCCTATACATGTATCGTAAATTTTTACGGAATGTGACATTGGATCTATAAATTTTTCTTTTCAAC
ATAAAATTTTTCGATCTGGTAAAAATGAAATTAGTACTATAATGAGTTATATGTATTGTAGACACCAGGCGAAGCAATGGTTTATCCAAACTTCAAAAAT
AAAAATCATTTTTTAATTTGTTTGTGAGAAAGCGTGAAGAGAGCCAAGAGACTTTAATTTTGGATTTCAACAATAAGAAATAAGAAAGAATTTTACGAAT
TGTACAGACGAATTCGAATTAGCCAATAAATTGGCTATCAAATACATTTTTTTTCTTCC