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Detailed information on CNT30395070


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 9e-169

BLAST vs NONCODE:
NONGMAT000778, E-value = 6e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532226Triticum turgidumEucalyptus grandis40.9243.2983.39313forward
CNT30316236Triticum turgidumCorylus avellana32.2953.8184.21247forward
CNT30512729Triticum turgidumJuglans regia61.8345.9783.09473forward
CNT30372986Triticum turgidumArabidopsis thaliana46.0134.4481.53352forward
CNT30276060Triticum turgidumChenopodium quinoa35.9543.3884.73275forward
CNT3019597Triticum turgidumCitrullus lanatus21.4421.9381.71164forward
CNT30379936Triticum turgidumManihot esculenta32.2973.9585.43247forward
CNT30711584Triticum turgidumGlycine max45.7549.7282.57350forward
CNT3045373Triticum turgidumPrunus dulcis42.0941.0781.68322forward
CNT30191206Triticum turgidumSecale cereale10062.597.39765forward
CNT30300473Triticum turgidumTriticum aestivum63.1449.994.82483forward
CNT30224354Triticum turgidumHordeum vulgare65.4996.5393.41501forward
CNT30561656Triticum turgidumActinidia chinensis99.4854.3683.31761forward
CNT30510505Triticum turgidumSolanum lycopersicum55.2938.9585.58423forward
CNT30552635Triticum turgidumOryza glaberrima66.1448.7589.92506forward
CNT30441158Triticum turgidumAegilops tauschii68.7669.394.68526forward
CNT30313757Triticum turgidumCamelina sativa49.1542.8781.91376forward
CNT3059659Triticum turgidumArabidopsis lyrata28.6350.4682.19219forward
CNT30135610Triticum turgidumLolium perenne55.8250.4791.1427forward
CNT3014085Triticum turgidumZea mays41.1851.6487.62315forward
CNT30605685Triticum turgidumGossypium raimondii57.9157.9882.62443forward
CNT30683923Triticum turgidumTriticum urartu10083.6196.73765forward
CNT30345702Triticum turgidumEragrostis tef40.133887.95307forward
CNT30596122Triticum turgidumOryza meridionalis45.235093.06346forward
CNT30369654Triticum turgidumOryza glumipatula60.2652.3990.24461forward
CNT30153558Triticum turgidumPrunus persica18.1741.1281.29139forward
CNT30107537Triticum turgidumOryza longistaminata45.8838.1988.89351forward
CNT30332479Triticum turgidumDioscorea rotundata14.7739.9384.96113forward
CNT30149525Triticum turgidumBrachypodium distachyon15.4239.0791.53118forward
CNT30100253Triticum turgidumOryza rufipogon78.0454.1789.95597forward
CNT30575986Triticum turgidumOryza barthii52.8134.2191.34404forward
CNT30497701Triticum turgidumDigitaria exilis42.3599.6989.81324forward
CNT30116094Triticum turgidumOryza nivara65.8857.2789.88504forward
CNT30604019Triticum turgidumOryza punctata39.8790.2491.15305forward

Expression of CNT30395070

Peptides detected in this lncRNA

>peptide 1 (93 aa)
WGTLPLHLLEHVASLLIQNTIDTAECILRGLDLNQVHGLQQPWLGSELRSVNDPPRRWDNLTTTPVNSISVENNITDLIADTTHVLLTQCSFF*

>peptide 2 (46 aa)
VGYLASASPRTRGLSSDSEHHRYRRVHSPGPGSQPGTRAPAALAWQ*

>peptide 3 (94 aa)
MFSSHNAPSFDAHWNPATTESLISFRYCTPLHMSTTMLGPVVSGPKHQIFLARSLSQPNSSDRILERTLGSSRGPMRPSSMASASPSSNGRASM*

Sequence

>CNT30395070
GTGGGGTACCTTGCCTCTGCATCTCCTCGAACACGTGGCCTCTCTTCTGATTCAGAACACCATAGATACCGCCGAGTGCATTCTCCGGGGCCTGGATCTC
AACCAGGTACACGGGCTCCAGCAGCCTTGGCTTGGCAGTGAGCTGAGAAGCGTAAATGACCCTCCTCGCCGTTGGGATAACCTGACCACCACCCCTGTGA
ATAGCATCAGTGTGGAGAACAACATCACAGACCTCATAGCAGATACCACGCATGTTCTCCTCACACAATGCTCCTTCTTTTGATGCCCACTGGAACCCAG
CCACAACAGAGTCCTTGATTTCATTCAGATACTGCACTCCCTTACACATGTCAACAACCATGTTGGGGCCAGTCGTCTCAGGTCCAAAGCACCAAATCTT
CTTGGCAAGATCCTTGTCCCAGCCAAACTCCTCAGATAGGATCTTAGAGCGCACCTTAGGATCATCACGTGGGCCAATGCGGCCATCATCAATGGCCTCA
GCCAGTCCCTCCTCCAATGGGCGAGCCTCCATGTAAAGACGGTTGTGCTTGTTCGGGGACTTGCTCATAACTGTGCGGCAGGACTTCTCCAGAACAGTCT
CACGGAAGGAGACAACAGGAGGCGAAACAATAATTTCAGCACCACCCATGAAGTCCTCCTGCAGATCCTTCAAACAGATTTCAAGGTGAAGCTCTCCAGC
TCCAGCAATGATATGCTCACCAGACTCTTCAATGCTACAGAGAACCATAGGGTCAGACTTCGCCA