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Detailed information on CNT30395031


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504976Triticum turgidumNicotiana attenuata52.8173.5999.01404reverse complement
CNT30553653Triticum turgidumOryza glaberrima32.4212.7597.18248forward
CNT30147862Triticum turgidumBrachypodium distachyon18.8254.75100144reverse complement

Expression of CNT30395031

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 2 (35 aa)
MQVERCFRGAGQKEKRLLAKAVSPCFKTIGRALQL*

>peptide 3 (28 aa)
MLSKPIHLSETEESGISCVGVKSVDLRRN

Sequence

>CNT30395031
CCTAATCATAGTCAAAATCTGAGTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGC
AGAAGGAAAAGAGGCTCCTAGCTAAAGCTGTCTCGCCCTGCTTCAAAACTATAGGGCGCGCGCTACAGCTTTGACCTAACGGCCTCCATTTGCTGGAATC
GGAATAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTCAAAAGCGCTGTTTGA
TGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGAC
ACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCT
TGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGTGGTAAGACGGGGGGGCAAGTG
TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACT
TGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAAC