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Detailed information on CNT30394802


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 4e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30685208Triticum turgidumTriticum urartu97.0971.4795.23734forward

Expression of CNT30394802

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MTHDSSVHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHNVQVHMHISSDGRTDGRMAKHI*

>peptide 2 (36 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSSAPPG*

>peptide 3 (69 aa)
MMSRPPSEKIWAPALNHTASPNLMPFLDRISGNTHPRAPSIAHREWITSSSRFLAKVSGSADSPAVSHP*

>peptide 4 (30 aa)
PYTRAPCQLMILSDDTRFFRPFPRAHLVLN*

Sequence

>CNT30394802
GCCGTATACGCGCGCGCCATGCCAGTTGATGATCTTGAGTGATGACACACGATTCTTCCGTCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACA
TTGCGCACAGCTAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACAACGTACAAGTA
CACATGCATATCTCGTCCGATGGACGGACGGACGGACGGATGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCACGCGTTGTTGT
TGACTGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACGGGTCCCTTTCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCG
GCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGTCGTCGGCGCCGCCGGGGTAGATGATGTCGAGGCCGCCCTCGGAGAAGATCTGG
GCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGGGAACACGCACCCCAGGGCGCCGAGCATCGCCCACCGTG
AGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCTGGGTCAGCCGACAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAG
GTACGATGGAGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGCCGT