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Detailed information on CNT30394768


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 0.0

BLAST vs NONCODE:
NONMTRT001605, E-value = 8e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187726Triticum turgidumSecale cereale52.6410095.06628forward
CNT30224243Triticum turgidumHordeum vulgare80.2291.3289.13957forward
CNT30241434Triticum turgidumAvena sativa66.1469.8888.09789forward
CNT30666211Triticum turgidumTriticum dicoccoides90.1110098.331075forward
CNT30137856Triticum turgidumLolium perenne64.2969.4186.05767forward
CNT30149365Triticum turgidumBrachypodium distachyon42.6780.4188.02509forward

Expression of CNT30394768

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MVTRASPKRNDDGRFFTALPAKAGEESDMVVAAILIDGGSMCSPRMRSGCGDGLRGSGQWAS*

>peptide 2 (43 aa)
MACTKKPNMENIARRPFLISLTLSSANASGSSARPSGSKLPPG*

>peptide 3 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSHP*

>peptide 4 (32 aa)
MTDSTLLARNKVGGKCPCVVVDRVGEVVSEVL*

>peptide 5 (38 aa)
MPQGRRQGRADQSCRPGRAGQRSHRAVHRQCGSPQRRP*

>peptide 6 (41 aa)
ISCRCPAPEHNMVMVLIKCEQQHICSDDRILVIYINLFGRT*

Sequence

>CNT30394768
GCATAAGTTGCCGTTGCCCGGCCCCGGAGCACAACATGGTAATGGTGTTAATCAAATGCGAACAACAACATATTTGTTCGGATGATCGAATCCTCGTAAT
TTACATCAACCTATTTGGGAGAACATAAGCTTTTGCAAAGAATCCTTGTCTCTTTTCCAGACAATCGAATCCTCGTAATTTACATCATGGTAGTACAACT
TGGACTGCACAATGACTGACTCCACCTTACTTGCCCGGAACAAAGTTGGTGGCAAATGCCCATGCGTTGTTGTTGACAGGGTCGGAGAGGTGGTCAGCGA
GGTTCTCTAGTGGACCCTTGCCGGTGACGATGGCTTGCACAAAGAAACCGAACATGGAAAACATAGCGAGGCGACCGTTCTTGATCTCCTTAACCTTGAG
CTCGGCGAATGCCTCAGGGTCGTCGGCAAGGCCGAGCGGATCAAAGCTGCCGCCCGGGTAGAGCGGGTCAACGATCTCACCGAGCGGTCCACCGGCAATG
CGGTAGCCCTCAACGGCGCCCATGAGCACGACCTGACAAGCCCAGATGGCAAGGATACTTTGTGCGTGCACAAGGCTTGGGTTGCCGAGGTAGTCGAGGC
CGCCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCAAACAGCCTCGCCGAACTTCACACCATTGCGGGCGAGAAGCTCGGGGAAGACGCAACCGAGCGC
GCCAAGCATGGCCCAACGGCAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCAGCCGACAGCCCAGCGGTGTCCCACCCATAGTCG
CCGGGGAATTCACCGGTCAGATAGCTCGGGGGCTCACCAGAAAGCGGGCCGAGGTAGAGCACGCGGTCAGAGCCGTACCACGGGCTGCCGGAGGCAACCT
GCTTGGCCTTTGCCGCTGTCTTGCGCATGGTGACGCGAGCCTCCCCGAAAAGAAACGACGATGGCAGGTTCTTCACTGCCTTGCCGGCAAAGGCTGGGGA
AGAGAGTGACATGGTGGTTGCAGCCATTCTGATCGATGGAGGTTCTATGTGTTCTCCAAGAATGAGGAGTGGGTGTGGAGATGGCTTAAGGGGATCGGGG
CAATGGGCTTCTTAAGGCAGTGGACGGGCAGAGGAAATTGAACTGGTGTAAGCTGACAGGAGAGAGGTGCATAGCAAGAAATCTGTATCTTGG