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Detailed information on CNT30394515


BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 3e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695986Triticum turgidumOryza sativa43.3138.0393.54356forward
CNT30522183Triticum turgidumSetaria italica43.3146.1788.76356forward
CNT30188325Triticum turgidumSecale cereale75.9173.2494.71624forward
CNT30300806Triticum turgidumTriticum aestivum96.2396.8294.31791forward
CNT30589400Triticum turgidumMusa acuminata43.3152.0591.29356forward
CNT30250317Triticum turgidumAvena sativa63.2667.190.77520forward
CNT30665254Triticum turgidumTriticum dicoccoides60.9550.2599.2501forward
CNT30129910Triticum turgidumCorymbia citriodora38.4450.1692.41316forward
CNT30685532Triticum turgidumTriticum urartu65.5757.4697.77539forward
CNT30362617Triticum turgidumSorghum bicolor36.0135.3291.89296forward
CNT30596886Triticum turgidumOryza meridionalis33.2126.8295.24273forward
CNT30579967Triticum turgidumEchinochloa crusgalli43.6735.2394.15359forward
CNT30117588Triticum turgidumOryza nivara43.3129.4993.54356forward
CNT30556832Triticum turgidumPanicum hallii39.5456.7293.54325forward

Expression of CNT30394515

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQHLSVRTTQSHNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (43 aa)
MACTKKPNMENMARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 3 (44 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAPAIACYSLALLRVS*

Sequence

>CNT30394515
CAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTAGTGTACACACACCAACTCCTCATCTCGACTCGCCCTCACATGC
AACATCTATCAGTCCGGACTACTCAATCTCACAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAGTTGTCGGC
CTAGAGGTTGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTT
CTCCAGGGGCCCCTTGCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCC
GCGAACGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCGAGCGGGCCGCCGGCGACGCGGT
AGCCCTCCACGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGCTGGGGTAGAGCACGCGGTCGGAGCCGTA
CCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGG
GTGCCCGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGCCCGCCATTGCGTGCTACTCGCTAGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGG
CGCTGGTGGTCGTTGGTGCTGT