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Detailed information on CNT30394428


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 4e-106

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30299594Triticum turgidumTriticum aestivum95.391.1499.71689forward
CNT30220987Triticum turgidumHordeum vulgare66.822.7699.59483forward
CNT30586133Triticum turgidumMusa acuminata65.8421.5390.97476forward

Expression of CNT30394428

Peptides detected in this lncRNA

>peptide 1 (32 aa)
EEKELGVGSYITGSLLTKPSWQAPTVLLLLLT*

>peptide 2 (32 aa)
MKDDLESTQEDRESHIREKVTNGVEPSNIAKA*

>peptide 3 (56 aa)
MVGAANSDSARISFFGSTKGELAQKLDRGKDAAGCRRLIQVPPEPREMVAYYTAHKL

>peptide 4 (41 aa)
MELNQVTLQRHNDSRIHFEVDLFARPIVGMCTRYHKGPISQ*

>peptide 5 (34 aa)
MIVGSTLKLTYSLGQSSECVRDTIRAQYLNSTLV*

Sequence

>CNT30394428
AAGAAGAGAAAGAACTGGGAGTTGGCTCCTACATAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCTCTTATTACTCTTGACTTG
ACTTATTAATAAGAAAACTACTCACTAACAAAATGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCACAAATGG
AGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGGAATGTGTACGAGATACCA
TAAGGGCCCAATATCTCAATAGCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCCGAAACGCAGGAATGATCTGACTAGAAAGTCATTCAAAACTT
GATCGAAGAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGAAAGGCTCGTTGGAATTGATCCGCTACGAGATTTACATT
ATACGCTAGAGAAGCACCTGAAGTACTAAACAGAATAGGTATTAGTTTTGTAATGGTTGGGGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGT
AGTACGAAGGGGGAATTGGCCCAAAAATTGGATAGGGGTAAAGACGCAGCCGGGTGCCGGCGGCTTATTCAAGTGCCCCCCGAACCGCGCGAAATGGTCG
CCTATTACACGGCTCACAAACTC