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Detailed information on CNT30394116


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673704Triticum turgidumSetaria viridis82.3758.0997.07341forward
CNT30525798Triticum turgidumPhaseolus vulgaris61.1132.7793.28253reverse complement
CNT30555411Triticum turgidumOryza glaberrima63.0464.7698.08261reverse complement
CNT30662247Triticum turgidumTriticum dicoccoides52.1762.9797.69216forward
CNT3017925Triticum turgidumZea mays100.9736.6398.8418forward
CNT30371139Triticum turgidumOryza glumipatula75.1262.8397.11311reverse complement
CNT30409295Triticum turgidumPapaver somniferum98.7972.3994.62409forward
CNT30102660Triticum turgidumOryza rufipogon80.6889.395.21334forward

Expression of CNT30394116

Peptides detected in this lncRNA

>peptide 1 (30 aa)
VRSWLRMNAGGMLNTCKSNGKWCFQWRTGE*

>peptide 2 (36 aa)
MISSWSERMISHTGTETRPRLLREAAVGNFPQWAKA*

Sequence

>CNT30394116
AGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGAACGGGAAGTGGTGTTTCCAGTGGCGAACGGGTGAGTAACGCGTA
AGAACCTGCCCTTGGGAGGGGAACAACAACTGGAAACGGTTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGAAATCCGCCCAAGGAGGGGCTCGCGT
CTGATTAGCTAGTTGGTAATAGCTTACCAAGGCGATGATCAGTAGCTGGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTA
CGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCTACGGGTCGTCAACTTCTTTTCTCG
GAGAAGAAACAATA