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Detailed information on CNT30394054


BLAST search results

BLAST vs Swiss-Prot:
sp|P13192|PSAF_HORVU, E-value = 2e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678495Triticum turgidumSetaria viridis9.9124.6995.9298forward
CNT30522442Triticum turgidumSetaria italica17.2920.9889.47171forward
CNT30641545Triticum turgidumNymphaea colorata27.8132.3586.55275forward
CNT30525128Triticum turgidumPhaseolus vulgaris17.6940.684.57175forward
CNT30629005Triticum turgidumVigna unguiculata30.8452.3280305forward
CNT30708991Triticum turgidumGlycine max16.4821.2882.82163forward
CNT30187643Triticum turgidumSecale cereale55.5151.8491.99549forward
CNT30300474Triticum turgidumTriticum aestivum85.1476.6293.71842forward
CNT30224070Triticum turgidumHordeum vulgare12.5455.6199.19124forward
CNT30562386Triticum turgidumActinidia chinensis36.165.3877.87357forward
CNT3086176Triticum turgidumVigna radiata364480.06356forward
CNT30665115Triticum turgidumTriticum dicoccoides55.41103.9895.99548forward
CNT308929Triticum turgidumZea mays24.6781.0695.49244forward
CNT30684912Triticum turgidumTriticum urartu21.1334.72100209forward
CNT30349302Triticum turgidumEragrostis tef11.7320.994.83116forward
CNT30620828Triticum turgidumCajanus cajan10.6247.9583.81105forward
CNT30579105Triticum turgidumEchinochloa crusgalli25.5823.9695.26253forward
CNT30174403Triticum turgidumVigna angularis18.426.1982.97182forward

Expression of CNT30394054

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSASSTTRSPLMSSRSTSMMISLMAGFFSPLTAMR*

>peptide 2 (85 aa)
MVAWMASAGAESGAYFLSDELSFFTDCFSRLANALDSLHGVRPAMSAAAGGGEVAMEAVRAAIAAASGVSLARARAGGRVEGFDS*

Sequence

>CNT30394054
TTTCCTATGTATGTTCGCACATTTTCACTCATAATATGCTGTGCATCATGAAATTGTTCTCAACAATTTGAACAATGGTAAAATACACAAATGTGAAGAG
AGAACACAATAGTTATACAAGATTGGGTTCAGTTTCTTAAATACAAGAGAGCTTCCATTTCTCCAGGATCCTATCAGCTCCTACACCAAGCCCACACAGA
TCGACACCACAAGCCCTCATCCATCCTCCGCTGTCCATCTGCCAAAGCAAACAAGAACGCAAGATACATTAATCTTCCACCATTGATTGATTGAGCCATG
GCTTTGAGCACATTAATTCAGACATGGGTGCAGAGCTCACCTGAGTTGGGACCGACTAGCCAACCACGCACGCATGGCCGCTGATTAGTAGCCGATGTCG
GCGTCGTCGACGACGAGGTCGCCGTTGATGAGCTCGCGCTCGACGTCGATGATGATCTCCCTCATGGCGGGCTTCTTCTCGCCGCTGACGGCGATGAGGT
AGCTGCGGCCGACCCACCCGATCCAGCCGGCGATGTAGAGGAAGAGCACGCCGGGGGTGATGAACTCGCCCCAGTGCCGCTGGTCGCCGCTGACGATGAG
GTGGGGCAGGCCGTCGGAGCCGCAGAGCAGGCCGAACTTGCCGTAGTTCTCAAACCGGCGCTTGGTCTTCTCGATGGTGGCCTGGATGGCGAGCGCGGGG
GCCGAGTCGGGCGCGTACTTCTTGAGCGACGAGTTGAGCTTCTTCACCGACTGCTTCTCCCGCTTGGCGAACGCCTTGGACTCCTTGCACGGGGTCAGGC
CCGCGATGTCGGCGGCAGCCGGCGGCGGGGAGGTGGCGATGGAGGCGGTGAGGGCGGCCATTGCTGCTGCGTCCGGCGTGTCCTTGGCGCGCGCGCGGGC
GGGCGGGCGTGTGGAGGGGTTTGATTCGTGATCGTTGGAGGGTGGGGGTGGGCGATTAGTTTGTGTGGGTTTGTAAGAGGAGGGGATAA