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Detailed information on CNT30393967


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696173Triticum turgidumOryza sativa51.1737.7194.14307forward
CNT30301046Triticum turgidumTriticum aestivum9568.9298.25570forward
CNT30552306Triticum turgidumOryza glaberrima55.6751.794.31334forward
CNT30251938Triticum turgidumAvena sativa61.3346.5294.84368forward
CNT30665949Triticum turgidumTriticum dicoccoides10070.5997.83600forward
CNT30473044Triticum turgidumSaccharum spontaneum62.6742.6892.55376forward
CNT30129613Triticum turgidumCorymbia citriodora61.8350.6891.91371forward
CNT30369202Triticum turgidumOryza glumipatula59.3339.9694.38356forward
CNT30108138Triticum turgidumOryza longistaminata61.6745.6894.32370forward
CNT30103236Triticum turgidumOryza rufipogon61.6737.4994.59370forward
CNT30574663Triticum turgidumOryza barthii59.3343.2693.82356forward
CNT30499073Triticum turgidumDigitaria exilis5947.5286.16354forward
CNT30115779Triticum turgidumOryza nivara5765.1494.44342forward
CNT30603587Triticum turgidumOryza punctata56.8367.1394.72341forward

Expression of CNT30393967

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (74 aa)
MACTKKPNMENMARRPFLISFTLSSAKASGSSASSSGKTQPSAPSMAQRQWMTSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30393967
GAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGACTCGCCC
TCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATGAAG
TTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCG
GCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCT
TGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGCAGCTCGGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATGACCTCCAGCTC
CCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCG