« Back to Triticum turgidum search


Detailed information on CNT30393906


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 2e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188029Triticum turgidumSecale cereale68.1571.0196.33490forward
CNT30300533Triticum turgidumTriticum aestivum65.7946.3398.73473forward
CNT30224983Triticum turgidumHordeum vulgare48.9657.798.01352forward
CNT30440100Triticum turgidumAegilops tauschii66.0646.5798.95475forward
CNT30250314Triticum turgidumAvena sativa55.2260.8990.93397forward
CNT30664919Triticum turgidumTriticum dicoccoides10097.5698.47719forward
CNT30721767Triticum turgidumTriticum spelta97.3693.21100700forward
CNT30371011Triticum turgidumOryza glumipatula28.7931.8597.58207forward

Expression of CNT30393906

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MACTKKPNMENMARRPFLISFTLSSAKASGSSARPRGSKLPPG*

>peptide 2 (58 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFASGELRLAVGGAGGRWCC

>peptide 3 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

Sequence

>CNT30393906
GTTAACCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCG
ACTCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAG
CCATGAAGTTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGA
GGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTC
CTTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCACGCGGTCGGAGCCGTACCACGGG
CTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGG
CCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTGGGAGGCGC
TGGTGGTCGTTGGTGCTGT