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Detailed information on CNT30393905


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84M43|CESA2_ORYSJ, E-value = 1e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671433Triticum turgidumSetaria viridis45.5445.8288.51148forward
CNT30639474Triticum turgidumNymphaea colorata3216.5683.65104forward
CNT30532104Triticum turgidumEucalyptus grandis2017.4789.2365reverse complement
CNT30500458Triticum turgidumCoffea canephora35.6920.6881.9116forward
CNT30270249Triticum turgidumChenopodium quinoa45.857.4581.88149forward
CNT30493203Triticum turgidumOlea europaea26.4622.1186.0586forward
CNT30287901Triticum turgidumTriticum aestivum30.4637.3691.9299forward
CNT30224742Triticum turgidumHordeum vulgare33.8547.0183.64110forward
CNT30144912Triticum turgidumMedicago truncatula29.2335.3282.1195forward
CNT30314318Triticum turgidumCamelina sativa42.4645.183.33138forward
CNT30216Triticum turgidumZea mays28.9230.5287.2394forward
CNT30608876Triticum turgidumGossypium raimondii36.6222.1682.35119forward
CNT30229639Triticum turgidumAnanas comosus47.3826.1982.47154forward
CNT30714734Triticum turgidumMalus domestica golden33.2319.683.33108forward
CNT30689838Triticum turgidumTriticum urartu37.5440.9493.44122forward
CNT30722091Triticum turgidumTriticum spelta47.3816.8983.12154forward
CNT30362547Triticum turgidumSorghum bicolor48.6232.5188.61158forward
CNT30572236Triticum turgidumVitis vinifera35.0819.2286.84114forward
CNT30706792Triticum turgidumPrunus avium35.699.2981.9116forward
CNT30102429Triticum turgidumOryza rufipogon46.4621.2488.74151forward
CNT30115702Triticum turgidumOryza nivara42.7720.8784.89139forward
CNT30112612Triticum turgidumFicus carica42.7715.2280.58139forward

Expression of CNT30393905

Peptides detected in this lncRNA

>peptide 1 (43 aa)
KTYGPDDNDGRRAVLPSHEPLEEWVQVDNHPEGKEELPEKWAP*

>peptide 2 (46 aa)
MCRNASDDPELFIPPPLVDANTTPPHLKDTSGEDRNKERDKPNTGNV

>peptide 3 (43 aa)
MPPMTQNCSFLHHSSMPTPLHLISRIPVAKIEIKREINQILAML

>peptide 4 (44 aa)
RRMAQTTTMVGVRFCRPMSPLRNGYKWIITQKAKKSFPKSGPHD*

Sequence

>CNT30393905
CAAGACGTATGGCCCAGACGACAACGATGGTCGGCGTGCGGTTCTGCCGTCCCATGAGCCCCTTGAGGAATGGGTACAAGTGGATAATCACCCAGAAGGC
AAAGAAGAGCTTCCCGAAAAGTGGGCCCCATGACTGATAGCCGCTGTTGATCGCGTAGGAGACCTTGGAAGACAGCAAATAGATGTGCAGAAATGCCTCC
GATGACCCAGAACTGTTCATTCCTCCACCACTCGTCGATGCCAACACCACTCCACCTCATCTCAAGGATACCAGTGGCGAAGATCGAAATAAAGAGAGAG
ATAAACCAAATACTGGCAATGTTGC