Detailed information on CNT30393881


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672556Triticum turgidumSetaria viridis48.8859.789.34197forward
CNT30186990Triticum turgidumSecale cereale64.2769.8195.75259forward
CNT30592159Triticum turgidumMusa acuminata26.5533.0289.72107forward
CNT30555589Triticum turgidumOryza glaberrima26.36.0796.23106forward
CNT30440426Triticum turgidumAegilops tauschii70.2260.3496.11283forward
CNT30624277Triticum turgidumDaucus carota22.5819.1284.6291forward
CNT30721746Triticum turgidumTriticum spelta75.4318.91100304forward
CNT30367313Triticum turgidumSorghum bicolor26.318.6692.45106forward
CNT30596728Triticum turgidumOryza meridionalis48.8840.6289.34197forward
CNT30371441Triticum turgidumOryza glumipatula48.8848.2890.36197forward
CNT3054135Triticum turgidumAmborella trichopoda26.317.4683.96106forward
CNT3024196Triticum turgidumPopulus trichocarpa22.3319.8288.8990forward
CNT30322486Triticum turgidumAsparagus officinalis22.0818.9885.3989forward
CNT30150825Triticum turgidumBrachypodium distachyon70.4747.9789.79284forward
CNT30104395Triticum turgidumOryza rufipogon24.8120.2495100forward
CNT30578506Triticum turgidumOryza barthii48.8812.3990.36197forward
CNT30117442Triticum turgidumOryza nivara48.8848.490.36197forward
CNT30725998Triticum turgidumLupinus angustifolius18.8636.1986.8476forward

Expression of CNT30393881

Peptides detected in this lncRNA

>peptide 1 (67 aa)
GANSSNSTNKYPSTIFFMWTDESRPRQRKLITNITTLPKYRAKTTSILQYMSLTGNLEAANIDKQQR*

>peptide 2 (55 aa)
RGKLKQLDKQISKHNLLYVDRRIQTTTAKTDNKYHHVTKVPSKNDIHIAIHVLDG*

>peptide 3 (30 aa)
QGQTQATRQTNIQAQSSLCGPTNPDHDSEN*

>peptide 4 (39 aa)
MRPTFWPGVPLHAVLVVGVTSLEHWLLSPATTSNLTNHGT

Sequence

>CNT30393881
CAGGGGCAAACTCAAGCAACTCGACAAACAAATATCCAAGCACAATCTTCTTTATGTGGACCGACGAATCCAGACCACGACAGCGAAAACTGATAACAAA
TATCACCACGTTACCAAAGTACCGAGCAAAAACGACATCCATATTGCAATACATGTCCTTGACGGGTAATCTAGAGGCAGCAAACATAGATAAACAGCAA
CGATAGCTCTAAGTGGCCTTGTCGGCCTTGGCAGCAGAGGCGGCAGCCTGGCCTCTGAGACGACCAGTCCTCCTGGCAGCGATGAGACCAACCTTCTGGC
CAGGAGTTCCTCTTCACGCGGTACTTGTGGTAGGCGTTACCAGCCTTGAGCATTGGCTTCTCAGTCCTGCCACCACCAGCAACCTGACCAATCATGGCAC
GGC