Detailed information on CNT30393827


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 1e-137

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30556099Triticum turgidumOryza glaberrima68.163.2888.17617forward
CNT30440221Triticum turgidumAegilops tauschii34.44100.3294.87312forward
CNT30664531Triticum turgidumTriticum dicoccoides78.37103.0597.04710forward
CNT30142786Triticum turgidumLolium perenne36.8731.3991.32334forward
CNT30799Triticum turgidumZea mays39.9643.6190.06362forward
CNT30685368Triticum turgidumTriticum urartu89.485.1799.75810forward
CNT30575846Triticum turgidumOryza barthii64.4666.0687.67584forward
CNT30116728Triticum turgidumOryza nivara66.8968.5587.95606forward

Expression of CNT30393827

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGSSAPPG*

>peptide 2 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSLFLANVSGSADNPAVSHP*

>peptide 3 (71 aa)
MTHDSSIHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHDVQVHMHISSDGRTDGRTAKHI*

Sequence

>CNT30393827
CGAATGTCCCGTTTCATGAGCTTGAAGTACCATATACGCCATGCAGTTGATGATCTTGAGTAATGACACACGATTCTTCCATCCATTCCCTCGTGCACAC
CTTGTGCTTAATTAATTTACATTGCGCGCAGCTAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACG
TTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGACGGACGGCTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGG
CGAAGGCCCAGGCGTTGTTGTTGACCGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACTGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAA
CATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGTCGTCGGCGCCGCCCGGGTAGATGATGTCGAGG
CCCTCGCCGAGGGGCCCGCCACCAACACGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCA
GGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAG
GATCTCCGGGAACACGCACCCGAGGGCGCCGAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCTTGGCGAACGTCTCGGGGTCAGCAGAC
AATCCGGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGGGTCTGCTCGGAGAACGGGCCCAGGTACTTGGGACGGTCAGGGC
CGTACC