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Detailed information on CNT30393705


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 2e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678616Triticum turgidumSetaria viridis15.3828.6999.29140forward
CNT30517240Triticum turgidumJuglans regia10.1130.4682.6192forward
CNT30630495Triticum turgidumVigna unguiculata16.0425.7580.82146forward
CNT30665496Triticum turgidumTriticum dicoccoides52.9769.0599.17482forward
CNT30362113Triticum turgidumSorghum bicolor15.3821.1597.86140forward
CNT30596768Triticum turgidumOryza meridionalis43.350.3289.09394forward
CNT30358694Triticum turgidumLactuca sativa14.9530.5683.82136forward
CNT30148465Triticum turgidumBrachypodium distachyon42.7550.1391.52389forward
CNT30577551Triticum turgidumOryza barthii43.345.9292.64394forward
CNT30499040Triticum turgidumDigitaria exilis20.7727.7993.12189forward
CNT30558912Triticum turgidumPanicum hallii7.3626.0797.0167forward

Expression of CNT30393705

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSKEFLPVNLTSMGLTFLPMLRKFCPTPCLPALTFSG*

>peptide 2 (33 aa)
KQSTTHHQHEKKPIMHMNNVNIQQYRHKITMYI*

>peptide 3 (63 aa)
MARVAGRGLAEGDQAAVMRWRVAAEACVAMAMAVALQARWFLAREEMGRGAEATRARGRWSGVW

Sequence

>CNT30393705
AAACAAAGTACCACTCATCATCAACATGAAAAGAAGCCGATCATGCATATGAACAACGTTAACATACAGCAGTATCGTCATAAAATTACCATGTACATAT
AACCTGATGCATCATTATCACCGATCGAATCCAGCATTCAAACTCGACAATTAAAATTACAGGACGTCCATCATCATCGCCACCCGCCAATAACTACCGG
TCGATGAACTAGCACGTACGCATATACGACGTACGAGATTAGATGTCGAAGGAGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGA
TGCTGCGGAAGTTCTGCCCCACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGCACCTCGCCGTTGGGGAA
GACGCGGTAGAACTGGTAGGCGATCTTGTACTTGGAGCGGAGGCGGTTGCCGAGGGCGAGCTTGAGGAGGTTGGGGCCCTCGCGCATGATGGCGGCGCCG
CCGGTGGGCATCTCGAACACCTGCTCCTTGGGGGAGGTCCAGGTGATGACGTAGAACTCCTCGACCTGGGCCTTGCGGAGCAGGCCGCCCGTGCTGCCGC
CGAAGATCGGGGACGGGGTGGACGGGTCCAGCTGCGGCGGCACGAAGCCCGCGGGCGCGGGCTCCGCCGGCGGCGCGGCGGGGGCGGGGCGGGGCCGGGC
CGCGGGCGGAGGATGGCATGGCGAGGGTGGCGGGGCGGGGCTTGGCGGAGGGCGACCAGGCCGCGGTGATGAGGTGGCGCGTCGCCGCCGAGGCTTGCGT
GGCCATGGCCATGGCGGTGGCGCTCCAAGCTCGGTGGTTCTTGGCGAGAGAGGAGATGGGGAGAGGAGCGGAGGCCACACGCGCGCGCGGGAGATGGAGT
GGTGTCTGGT