Detailed information on CNT30393514


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 8e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30300848Triticum turgidumTriticum aestivum73.6283.1296.55522forward
CNT30664831Triticum turgidumTriticum dicoccoides76.1685.9999.81540forward
CNT30685331Triticum turgidumTriticum urartu78.4282.2599.1556forward
CNT30721718Triticum turgidumTriticum spelta60.3794.9100428forward
CNT30351770Triticum turgidumEragrostis tef27.519.9885.13195forward

Expression of CNT30393514

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNPTLLNSRQGQGLELLDALDGPHLQIRLTFLIH*

>peptide 2 (54 aa)
MKLTHCTWRMLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

>peptide 3 (40 aa)
MPYRVILDCSSFQHKLCLAAEIKDVRAVPKMFLIINYPNT*

>peptide 4 (79 aa)
MCMCIYIATDCIHIRACFLETCWYMNMDIHIFLGTNKKDKWRRKTQSNVRVDKTAMALYMWPVVSELFRPCRTPRSPVA*

Sequence

>CNT30393514
ATACACTAGTATCAGACAATGCCTTACCGTGTTATTCTTGATTGCTCATCATTCCAACATAAACTATGTCTAGCGGCGGAAATAAAAGATGTGCGTGCGG
TGCCAAAGATGTTTCTCATTATTAATTACCCGAATACATAGTCGACAGATTGTATAAATATATTATGTGCATGTGCATATACATAGCCACCGATTGCATT
CACATACGAGCATGCTTTCTCGAGACATGTTGGTACATGAACATGGACATACACATATTCTTAGGAACAAACAAGAAAGATAAATGGAGAAGGAAAACCC
AAAGCAATGTCAGAGTTGACAAAACCGCAATGGCACTTTATATGTGGCCCGTGGTGAGTGAGCTGTTTAGGCCTTGCCGGACTCCTCGCAGCCCGGTGGC
TTGAAGGCGATGAAGCTGACGCACTGCACCTGGCGCATGTTGTCGAATCCGATGATGCGGACGTACGCGTCAGGGTACTCCTTCTTGACCTCTTCCACCT
CGTTGATCACCTGTGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTACCGGCCATCGTAGTACCCAGGGGATGCGTTGTGCTCACG
GAAGATGAACCCAACCTTGCTGAACTCGAGGCAAGGACAGGGTCTCGAACTTCTTGATGCCCTCGATGGGCCACACCTGCAAATCAGATTGACATTTTTA
ATACATTAA