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Detailed information on CNT30393404


BLAST search results

BLAST vs Swiss-Prot:
sp|P15688|NU2M_BETVU, E-value = 7e-124

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374346Triticum turgidumArabidopsis thaliana96.412992.741129forward
CNT3019915Triticum turgidumCitrullus lanatus8.6329.6294.06101reverse complement
CNT30187165Triticum turgidumSecale cereale18.110099.53212reverse complement
CNT30592538Triticum turgidumMusa acuminata20.0722.7996.6235forward
CNT3086242Triticum turgidumVigna radiata8.3726.1384.6998reverse complement
CNT30627909Triticum turgidumDaucus carota69.1758.1994.32810forward
CNT30680683Triticum turgidumTriticum urartu45.09100.3897.92528forward
CNT30574572Triticum turgidumVitis vinifera101.6217.6792.861190forward
CNT30705826Triticum turgidumPrunus avium23.1482.8791.88271forward
CNT30575698Triticum turgidumOryza barthii18.7928.6192.27220reverse complement
CNT30551547Triticum turgidumOryza brachyantha32.9689.7798.7386forward

Expression of CNT30393404

Peptides detected in this lncRNA

>peptide 1 (78 aa)
TPKANFHSPNPGSSRVVIVDSYKDMESTVDVSDSTLSFVACIPICVATDSVSYVSGARKTAFGLPTLLMATFRSSNDL*

>peptide 2 (41 aa)
MEKVIAEIGFVLARAPKSAIYLTRVCRNAGTMENASIVIDA*

>peptide 3 (40 aa)
MLSPGWVNPHRYQVPTFIESKERLSPRERGVFLGLKRLNR*

Sequence

>CNT30393404
TTACACCTAAGGCCAACTTCCATTCACCAAACCCAGGTTCATCTCGTGTAGTGATTGTGGACTCGTACAAGGATATGGAGTCGACGGTTGATGTATCAGA
CTCGACCCTGTCTTTCGTAGCATGCATTCCCATCTGTGTTGCAACTGATTCGGTAAGCTACGTGTCCGGTGCACGGAAAACTGCCTTCGGTCTCCCAACC
TTACTCATGGCAACTTTCCGGTCGTCCAACGACCTATAACGCTAGTCACTACTCCCACTGGGGCTAGGAAGTAAGCCCCACATCCCAAAGCGGCGAAGAA
CAAATAGAATTTGCTACAAAAGCCGGCTAACGGGGGTATTCCTGCGTATGAGAACATTGTAATGGAGAAGGTCATAGCCGAAATAGGATTCGTTTTGGCT
AGAGCGCCCAAATCCGCTATATATTTGACACGGGTTTGCCGTAATGCTGGAACTATGGAGAATGCATCTATCGTCATTGATGCATAAATAAATATACCAA
TTAGTAGTGATTGAATTCCTTCTATGGTTCCACATGAGAAACCAGTACAAATATAACCTACATGTCCAATCGAACTATGAGCTAGAGGTCTTTTGACTTT
CGTTTGGGCCATGGCGGCCAGTGCTCCTAAGATCATAGAAGCAATGCTGCAGAAAAAGAAGATTTGTTGTAATGTACCCCCATAGGAAGCAACAATAGAA
ACACGTGACATATTTGCAGAAATAGAGATTTTAGGCGCAATAGAAAGGAATGCTGTCACCGGGGTGGGTGAACCCTCATAGATATCAGGTGCCCACATTT
ATAGAGTCAAAAGAGAGATTGAGTCCGAGGGAGAGGGGGGTTTTCTTGGGGCTCAAGAGATTGAATAGATAGGGCCCCACAAGTTGTTAATTCGCCGCTG
GGGAATTCACACAAAAGGGAAGGACTTATTCTCAACGAAAAAAGTGCTCTCTGAACCGAACGTGAAAGTTGTTTTCCATCAGACGGCTGTTCACGTAACT
CCACTCTCGGCTTGGATTATATATCCATTTGGTCCGCTCTCGGCCATTCCACACGCTGCCTAGCAGAGACGTGGTTATCTGAAGTGGATTCTCTCTTTTG
TAGTAGATGCCGAACCTGCTGCTCAGTGGGCGGGCGCAGCAGCTACATGGACCCCTTTCTTTATGTTGTTG