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Detailed information on CNT30393324


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 4e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520889Triticum turgidumSetaria italica14.7221.3287.74155forward
CNT30187563Triticum turgidumSecale cereale52.2370.697.09550forward
CNT30300099Triticum turgidumTriticum aestivum50.1466.7594.7528forward
CNT30224976Triticum turgidumHordeum vulgare54.4270.9296.51573forward
CNT30555700Triticum turgidumOryza glaberrima30.9635.4385.58326forward
CNT30258024Triticum turgidumAvena sativa27.2671.9392.68287forward
CNT30684612Triticum turgidumTriticum urartu92.69100.2198.57976forward
CNT30597191Triticum turgidumOryza meridionalis12.8246.5594.07135forward
CNT30151009Triticum turgidumBrachypodium distachyon32.3866.688.27341forward
CNT30578501Triticum turgidumOryza barthii30.9629.0685.58326forward
CNT30115743Triticum turgidumOryza nivara31.4329.6184.59331forward

Expression of CNT30393324

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MLSNPMMRTYASGYSFLTSSTSLITCVASVHPNIGSFHIVQYRPS*

>peptide 2 (69 aa)
MSRKTETMLFTCMHLILPPLLTLPRLAPLERRLTGRPAVDLSPWKGATEVADEAITVGAMAVLCRYIAC*

>peptide 3 (29 aa)
MYTLTDYNSSSAHIRWRSRLNCVLIDVGI*

>peptide 4 (29 aa)
PRLRQLFWDEGSNKHGGGDIFHWLPLKRI*

>peptide 5 (79 aa)
MRPCIYIATDSIHIRACFLEPCWYMNMDIHIFLGTNKKDKWRRKTQSNVRVDKTAMALYIWPVVSELFRPCRTPRSPVA*

Sequence

>CNT30393324
CCAAGGTTAAGACAATTATTTTGGGATGAAGGAAGTAATAAGCACGGCGGTGGAGATATTTTCCATTGGTTACCATTAAAACGTATATAGTTGACATATT
GTATAATATTATGCGTCCGTGCATATACATAGCCACCGATAGCATTCACATACGAGCATGCTTTCTCGAGCCATGTTGGTACATGAACATGGACATACAC
ATATTCTTAGGAACAAATAAGAAAGATAAATGGAGAAGGAAAACCCAAAGCAATGTCAGAGTTGACAAAACTGCAATGGCACTTTATATATGGCCTGTCG
TGAGTGAGCTGTTTAGGCCTTGCCGGACTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGACGCATGTTGTCGAATCCGATG
ATGCGGACATACGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCGTTGATCACCTGTGTGGCGTCAGTGCACCCGAACATAGGCAGCTTCCACATTG
TCCAATACCGGCCATCGTAGTACCCAGGAGATGCGTTGTGCTCACGGAAGATGAACCCAACCTTGCTGAACTCGAGGCAAGGCACCCACTTGGAGCGGAT
CAGGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCGATGGGCCACACCTGCAAATCAGATTGACAGTCATGTATACATTAACAGACTATAACTCTAGTT
CTGCACATATCAGATGGAGAAGCCGGCTAAATTGTGTGCTGATTGACGTCGGGATTTGAAACTATTGTATGTAATTGACCATATGAAAGTTCACATATGA
TTGTTATTGTCTTCCGTGAGGTAGAAAATGAGTAGAAAGACAGAGACGATGTTGTTTACCTGCATGCACCTGATCCTTCCACCGTTGCTGACGCTGCCGA
GGCTAGCGCCGTTGGAGCGGCGGCTGACGGGGAGGCCGGCGGTGGACTTGAGCCCCTGGAAAGGAGCGACGGAGGTGGCCGACGAGGCCATCACGGTGGG
GGCCATGGCTGTACTATGTAGGTATATAGCTTGCTAGGAGGAGGCACTCTGGC