Detailed information on CNT30393271


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187809Triticum turgidumSecale cereale72.8569.7390.23440forward
CNT30224296Triticum turgidumHordeum vulgare54.863.990.03331forward
CNT30247625Triticum turgidumAvena sativa16.8923.8396.08102forward
CNT30684663Triticum turgidumTriticum urartu54.1467.1599.69327forward
CNT30721717Triticum turgidumTriticum spelta64.97399.49392forward

Expression of CNT30393271

Peptides detected in this lncRNA

>peptide 1 (97 aa)
AVHPLGFPPFPAPHPYKVRVQSPRRQQSTEIGIVHTLPPPPPPRKGERGRLRRRDEGQVEEEEDEEAQEEAPKDEAAIQVGALEGGEASSDIQAAKL*

>peptide 2 (33 aa)
MRLWLWKLPYLCLVKFSCLILVWLCSRTEFYVM*

Sequence

>CNT30393271
GCCGTCCACCCGCTAGGGTTTCCCCCCTTCCCAGCACCCCACCCCTATAAAGTACGAGTCCAGAGCCCCCGCCGCCAACAATCTACGGAGATCGGGATCG
TCCACACCCTTCCGCCGCCGCCGCCGCCGCGAAAAGGAGAGCGAGGCCGACTCCGCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGAGGC
TCAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCGCCTTGGAGGGAGGGGAAGCATCATCTGACATCCAGGCAGCAAAACTCTGAGGGATG
ATGGCATTGTCCCAGTGATTCCTGATTTGTTATGCGGTTGTGGCTGTGGAAGTTGCCTTACCTGTGTTTGGTCAAATTTAGCTGTTTAATACTAGTCTGG
CTATGTTCCAGGACTGAGTTTTATGTAATGTGAGGATTATATGTGTTTGTGACTGAATTTTATGCACCTATTATCCTTGAGGTACTCCGAATTGTGCCTT
TTGGCCCTGCATTTGTTGTGTCAGTTATTTTATCTTTTTGCGGTGTGACAGCTCCTTTCCTTTGCTCCTAGATGAACGAATACCAGGAACACTAAAGATA
TTTG