« Back to Triticum turgidum search


Detailed information on CNT30393130


BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673431Triticum turgidumSetaria viridis23.4857.9695.85193forward
CNT30456340Triticum turgidumSaccharum spontaneum54.2667.5889.24446forward

Expression of CNT30393130

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MARMLCACTSSRFLAKVSGSADSPAVSQP*

>peptide 2 (56 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLAGFASGELRLAVGGAGGRW

>peptide 3 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 4 (68 aa)
MACTKKPNMENMARRPFLISFTLSSAKASGPRWRGCSARAPAPGSWRRSRGRPTAPRCPSRSRRGTRR*

Sequence

>CNT30393130
CCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGACTCG
CCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGCCATG
AAGTTGTCGGCCTAGAGCTTGAGCTGACGGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGG
TCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCA
CCTTGAGCTCCGCGAAGGCCTCGGGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGC
CCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGT
ACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGG
GGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTGCTAGCTGGCTTTGCTTCGGGTGAGCTGAGGCTGGCAGTG
GGAGGCGCTGGTGGTCGTTGGT