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Detailed information on CNT30392802


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LCE1|GLN12_ARATH, E-value = 8e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30296689Triticum turgidumTriticum aestivum41.7657.69100304forward
CNT30223060Triticum turgidumHordeum vulgare32.2867.3482.98235forward
CNT30250445Triticum turgidumAvena sativa19.5126.0194.37142forward
CNT30137282Triticum turgidumLolium perenne20.0534.0395.89146forward
CNT301731Triticum turgidumZea mays16.0720.2188.89117forward
CNT30364720Triticum turgidumSorghum bicolor21.2924.4583.87155forward

Expression of CNT30392802

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MCCACRLPSFSMAVLITSYPPASRIDLVL*

Sequence

>CNT30392802
ATGACATGTGATCGAACAGAATCATAACCGGCTCCATGATTTCATTTATCGGAATGCGAAAACAACATTATTTTCAGAGTAGACTGAAGACTCTTACTCT
TATCTGAACGAGTAAAGTGAAAGACACCAAAGGCACGCCCCAAAAACAGACTAGACCTTGCAAAAGAAATGGAAACACGAAACGTTTTGCAGAAATTAAT
CAATCGCCACCCTCGATCGAGAGAGTCGAGAGCCTGGGTGTCATGATCTGGCGGCGGTAGGCATGGCCGTGGGTGGGTGGCTCAGAGGAGGAGCGTGGTC
TCGGCGATCATGGAGGTGACGACGTAGGGGTCCATGTTGGAGGCCGGCCTGCGGTCCTCGAAGTAGCCCTTGCCGTCCTTCTCGGTGTCGCGGCCCACGC
GGACGGACGCGCCGCGGTCCGCCACGCCCCACTTGAAGGTGTTGATGTCGGCGGTCTCGTGGTGGCCCGTGAGGCGGCGATGTGCTGCGCGTGCCGCTTG
CCCAGCTTCTCGATGGCCGTCTTGATCACCTCGTACCCGCCGGCCTCCCGCATCGACTTGGTGCTGTAGTTGGTGTGCGCGCCCGCGCCGTTCCAGTCGC
CCGGGATCGGCTTCGGGTCCAGGGACAGCACCACCCCGGCAACCTCAGTGATCCTCTGCAATTCACCATCAACCAATCCAATAAAATCAGCATCGAACCA
TATTCGTTCGGTTGCGACTCAGGGGAGG